Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19170 315 / 1e-102 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G78390 251 / 3e-77 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT1G30100 241 / 2e-74 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G14440 235 / 6e-72 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT4G18350 227 / 6e-69 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G63520 221 / 4e-67 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G24220 219 / 3e-66 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G32810 47 / 1e-05 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035696 [exp] 324 / 5e-106 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 216 / 1e-63 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10011750 [exp] 204 / 3e-60 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10019710 [exp] 203 / 5e-60 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 201 / 2e-57 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 197 / 2e-57 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 174 / 3e-49 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10042482 [exp] 138 / 3e-37 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10037285 [exp] 119 / 4e-29 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151900 [exp] 441 / 1e-151 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 434 / 3e-149 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 427 / 5e-147 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 332 / 4e-109 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 330 / 3e-108 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 228 / 3e-69 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 227 / 6e-69 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.011G112400 [exp] 224 / 5e-68 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 219 / 5e-66 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.001G265600 [exp] 214 / 2e-64 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10008443 pacid=23163482 polypeptide=Lus10008443 locus=Lus10008443.g ID=Lus10008443.BGIv1.0 annot-version=v1.0 ATGGTGGAGGGAGAGCTCCCGAGTTGCCTTAACAGGTTGTACATCCGAAACGGGCCGAACCCACAACACTTGGACAAAATCAAAGGCCCCGTCCATTTCT TTGAGGGAGACGGGATGCTCCATTCCTTGAAAATATCCAATGGTCGAGCCACATATTGTTGTCGATACGTCGAGACGTATAAGTACTTGTTGGAAAAGGA AAAGGGTTCGCCTGTGTTTCCGAACTTCTTATCCGGTTTTTATGGCCTAACCGATCTAGTTTCTTGTTTGGGAGCGGTTGGGAAAGTATTGTCCGGACAG ATTGACCTCATGAAAGGTTTATGTTTGGCTAGTACTAGTGTGGCAATGATTGAGAACAAGATTGTGGCTTTATGTGAATCCGACATGCCTTACATTGTTG ATGTGAAGGAAGATGGAGATATCGAAACGTTGGGGAGGTGGGATTTCGACAAGGGTTTGTTTGCTAACGTGACGGCTCATCTTAAAGTTGATCCTCTCAC TAATGAAGTTTTTGCCTTCCGTTGTAGCTTAGGTAACTATCCACACCTAACCTACTCCCGTTTCACCGCCGACGAAACCAAACTCCCCGACGTCCCAATC CACTCGATCAACCAAGCAAGCTTCGTCCATGACTTCTTCATCACAACTCACTACGCAATCTTCCCAGAATCCCAATTACAAATCGACCCATCACAATTAC TCTTCGGTAAAGGAATCCCAGTGGTCTGCAACCCAACCAAAACCCCAAGAATCGGAGTCCTCCCCCGGTACGGTTCGACCGATTCCAACATAATGAACGT CTTCCACCAGTGGGAGACGGCTCGGTTTCTGCTGGAGGAAATTACACTGAATCTGAGAACAGGGGAAATCGGTTCAAGAAGAGCTTTGTCGGCGACGAGT TTGGAATTCGGAGCGATTAATCCTTTATTTGTGGGGAGGAAGACGCGCTACGCGTATTACAGATTGGCCGACAAGGTTCCGAGGACGGCTGGGGTTGTGA AGATTGAATTGGCGGCCGGGTGTGAGGTCGGTCGGCGACCAGGTCAGTTCGGCGGGGAGCTGGTTTTCGTGGCGACGGGAGGAGAGGAGGATAGTGGGTT TTTTATGAAGTATATGCACGATGAGAATTAA
AA sequence Show only first row Show all	>Lus10008443 pacid=23163482 polypeptide=Lus10008443 locus=Lus10008443.g ID=Lus10008443.BGIv1.0 annot-version=v1.0 MVEGELPSCLNRLYIRNGPNPQHLDKIKGPVHFFEGDGMLHSLKISNGRATYCCRYVETYKYLLEKEKGSPVFPNFLSGFYGLTDLVSCLGAVGKVLSGQ IDLMKGLCLASTSVAMIENKIVALCESDMPYIVDVKEDGDIETLGRWDFDKGLFANVTAHLKVDPLTNEVFAFRCSLGNYPHLTYSRFTADETKLPDVPI HSINQASFVHDFFITTHYAIFPESQLQIDPSQLLFGKGIPVVCNPTKTPRIGVLPRYGSTDSNIMNVFHQWETARFLLEEITLNLRTGEIGSRRALSATS LEFGAINPLFVGRKTRYAYYRLADKVPRTAGVVKIELAAGCEVGRRPGQFGGELVFVATGGEEDSGFFMKYMHDEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10008443 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	4.9	0.7308
AT2G32450			Calcium-binding tetratricopept...		Lus10038571 [exp]	5.5	0.6942
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010875 [exp]	11.5	0.6329
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10005834 [exp]	23.1	0.6423
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	25.3	0.7279
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10009500 [exp]	28.9	0.6351
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026536 [exp]	31.7	0.6268
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	33.9	0.6869
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	36.0	0.6249
					Lus10025316 [exp]	36.7	0.6249

Compare expression of checked genes

Lus10008443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.