Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27180 54 / 2e-09 unknown protein AT3G11690 43 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013375 [exp] 194 / 2e-63 AT2G27180 96 / 3e-25 unknown protein Lus10021243 [exp] 41 / 0.0003 AT3G11690 112 / 6e-30 unknown protein Lus10029349 [exp] 40 / 0.0003 AT3G11690 105 / 7e-28 unknown protein Lus10016197 [exp] 40 / 0.0003 AT3G11690 107 / 3e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151600 [exp] 56 / 4e-10 AT2G27180 54 / 1e-09 unknown protein Potri.016G066300 [exp] 43 / 2e-05 AT3G11690 62 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008446 pacid=23163479 polypeptide=Lus10008446 locus=Lus10008446.g ID=Lus10008446.BGIv1.0 annot-version=v1.0 ATGGCTCGTCAATCCTTTCTCTCGTCTTCACGCGGAAGCCGGAAGAAGCAACTGCTACTATCGGACAAGCCACATCCGAAACTGTCTGAGAAGGAGAGCG GGAACGGAGATGAGAGAGGAGGTCATAATCGGCTGAGGCTGGAGAGGAGCCATGCGATTCCGCCGAAGAGGATCGGGGAAGTGGTGGGAGGAGCGGCAGC AGAGTGCGCGGCGGTGTGCTGCTGCTGTCTGTGCACGCTGGTGAACATAGTCCTGATGGCGGTGTACAAAGTGCCGGCGTGCCTGTGCCGGAAGGCGAAG AAGAGGCAGCAGAGGTTGAGGAGGAAGAAGCAGCAGCAGAGCCAACACGGGCTGCTGGCGCCGACGGCGACGGCGGAGATGGACGGGTCCAGGGCGGAAC TGGAGAGAGAAGCGAGGGAGGTTGTGGAGAGAGGGAAGGCGGAAGGGGCGGTGACGGAGGCGGAAGCGGTGGTTTTGGAGAAGGAGATGTGGGACCGGTT CTACGGGACGGGGTTTTGGAGGAGTCCTTCGCAGAGAGATACTTGA
AA sequence Show only first row Show all	>Lus10008446 pacid=23163479 polypeptide=Lus10008446 locus=Lus10008446.g ID=Lus10008446.BGIv1.0 annot-version=v1.0 MARQSFLSSSRGSRKKQLLLSDKPHPKLSEKESGNGDERGGHNRLRLERSHAIPPKRIGEVVGGAAAECAAVCCCCLCTLVNIVLMAVYKVPACLCRKAK KRQQRLRRKKQQQSQHGLLAPTATAEMDGSRAELEREAREVVERGKAEGAVTEAEAVVLEKEMWDRFYGTGFWRSPSQRDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27180			unknown protein		Lus10008446 [exp]	0	1
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	3.0	0.8756
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	6.0	0.8364
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	8.1	0.8097
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	8.4	0.8309
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	8.5	0.8475
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017076 [exp]	8.9	0.7916
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	11.0	0.8061
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	11.2	0.8234
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	11.5	0.8335
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	15.2	0.7747

Compare expression of checked genes

Lus10008446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.