Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 241 / 3e-76 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 110 / 5e-27 RHF1A RING-H2 group F1A (.1) AT5G15790 59 / 8e-10 RING/U-box superfamily protein (.1.2) AT3G02290 58 / 1e-09 RING/U-box superfamily protein (.1.2) AT4G00335 57 / 3e-09 RHB1A RING-H2 finger B1A (.1.2.3) AT5G41350 57 / 4e-09 RING/U-box superfamily protein (.1) AT3G58720 57 / 4e-09 RING/U-box superfamily protein (.1.2) AT4G23450 55 / 6e-09 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G38895 54 / 3e-08 RING/U-box superfamily protein (.1.2.3) AT1G14200 53 / 3e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013374 [exp] 551 / 0 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 281 / 9e-92 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 279 / 9e-91 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 228 / 5e-72 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 220 / 7e-69 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 115 / 1e-28 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 106 / 4e-25 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017788 [exp] 63 / 3e-11 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 61 / 9e-11 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066400 [exp] 368 / 1e-125 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 350 / 1e-118 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 350 / 2e-118 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 108 / 4e-26 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 103 / 3e-24 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.001G101700 [exp] 60 / 4e-10 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 59 / 8e-10 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.003G129900 [exp] 57 / 2e-09 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.010G140300 [exp] 56 / 7e-09 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.001G068700 [exp] 56 / 1e-08 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008447 pacid=23163488 polypeptide=Lus10008447 locus=Lus10008447.g ID=Lus10008447.BGIv1.0 annot-version=v1.0 ATGGAGGATAGCAAGAAGCCGGAGTCACATTTGACATCTGCTGCGGCTTTTGTGGAAGGGGGAATTCAGGATCCATGTGATTATGCTTGCAGCATTTGTC TTGAAGAGTTCTGTGACAGTGATCCGTCCACTGTGACCACTTGTAAGCATGAGTTCCATCTTCAATGTGTCCTTGAATGGTGCCAAAGAAGCTCACAGTG CCCCATGTGCTGGCAAGCTATTTCCCTGAAGGATCCCACAAGCCAAGACCTGCTTGAAGCTGTAGAACGCGAGAGAAATATACGATTGACTCCACCTAGG ACTTCAGCCATATTTCATCATCCCACTCTGGGAGACTTCGAACTACAACATTTGCCAGTGGGTATAAATGAAGCTGAACTCGAAGAGCGTATTATTCAGC ACCTTGCCGCAGCTGCTGCGATGGGGCGACGACACGTTGCTCGAAGAGACAGAGATGGTTCCCGAAACCGGTCATCATCTCAAAGTCGTCCACAGTATGT AATGTTTTCAAATCATGTGAATTCGCCTACTGGCGGTCCAACTTCTACTTCCCCAACTCAGAGAGGAGAGGTTGAACCGGGTCCAATGGGTACACTAGCC ACTCCATCTTCACCTGCCAGAAATATCGGCGATTCTTCTTCCCTTCCAGATAGTGGTGAAGCAAACTGGCAAGTGATAACACAATCATCGACCGCTGGCC ATGCTAATTCGCCCTCTGCTTCTGGCTCTGGTTCCGGTGTTATTATCGGCCAACATGGAGGTTCACCAAACAATGGGTCTCCTAACCATTCTTCCCCAAA TAGTCAAGATAGAGCAGGTCCATCTGAATTCCAGTCAATATCAGAGTCTATCAAATCTAAGCTCAATGCAGTTTCATCAAGATACAAGGAATCAATTTCA AAGAGCACAAGGGGTTGGAAGGAGAGATTCTTCTCTCGCAACTCTGCCGTGGCAGATCTCAGTTCCGATGTTCGAAGAGAGGTCAATGCTGGAATCGCAA CGGTTTCGCGCATGATGGAGCGCCTGGACGCTAGAGAGAGCTCGAGCCCAAGAACAAGCACTTCTTCAGCACCCAATAGGGGGGAGGATAATCAAGACTC GGTATCGGACAATAACGAACATATATCAGAAGCTGGAAGTACTGGAGCTATTGGAACAGGTACCGGTACCACCAGCATTCATGCTTCACCAGCTGCAGCT TCATCCGGTACAAATTGA
AA sequence Show only first row Show all	>Lus10008447 pacid=23163488 polypeptide=Lus10008447 locus=Lus10008447.g ID=Lus10008447.BGIv1.0 annot-version=v1.0 MEDSKKPESHLTSAAAFVEGGIQDPCDYACSICLEEFCDSDPSTVTTCKHEFHLQCVLEWCQRSSQCPMCWQAISLKDPTSQDLLEAVERERNIRLTPPR TSAIFHHPTLGDFELQHLPVGINEAELEERIIQHLAAAAAMGRRHVARRDRDGSRNRSSSQSRPQYVMFSNHVNSPTGGPTSTSPTQRGEVEPGPMGTLA TPSSPARNIGDSSSLPDSGEANWQVITQSSTAGHANSPSASGSGSGVIIGQHGGSPNNGSPNHSSPNSQDRAGPSEFQSISESIKSKLNAVSSRYKESIS KSTRGWKERFFSRNSAVADLSSDVRREVNAGIATVSRMMERLDARESSSPRTSTSSAPNRGEDNQDSVSDNNEHISEAGSTGAIGTGTGTTSIHASPAAA SSGTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10008447 [exp]	0	1
AT5G35690			unknown protein		Lus10000922 [exp]	3.5	0.8671
AT5G40670			PQ-loop repeat family protein ...		Lus10014572 [exp]	9.9	0.8511
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	15.7	0.8056
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	16.2	0.8210
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	18.9	0.8066
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	20.0	0.8329
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10021960 [exp]	22.8	0.8205
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	27.4	0.8121
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	35.6	0.8098
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	51.1	0.7861

Compare expression of checked genes

Lus10008447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.