Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08470 592 / 0 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 591 / 0 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 367 / 9e-126 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 307 / 8e-102 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57020 301 / 6e-100 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57010 300 / 2e-99 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41300 286 / 1e-93 SSL1 strictosidine synthase-like 1 (.1) AT2G41290 253 / 6e-81 SSL2 strictosidine synthase-like 2 (.1) AT1G74000 178 / 1e-52 SS3 strictosidine synthase 3 (.1) AT1G74020 171 / 6e-50 SS2 strictosidine synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013370 [exp] 669 / 0 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 282 / 1e-91 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 281 / 4e-91 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10012095 [exp] 228 / 1e-71 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10034411 [exp] 192 / 9e-59 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006331 [exp] 189 / 5e-57 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009646 [exp] 184 / 1e-53 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10029599 [exp] 178 / 7e-53 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009014 [exp] 182 / 2e-51 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G214500 [exp] 637 / 0 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.016G037900 [exp] 351 / 2e-119 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 314 / 9e-105 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 315 / 1e-104 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.007G130700 [exp] 311 / 2e-103 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 307 / 1e-101 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.T015518 [exp] 257 / 5e-83 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 257 / 5e-83 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 160 / 8e-46 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 154 / 1e-43 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10008451 pacid=23163492 polypeptide=Lus10008451 locus=Lus10008451.g ID=Lus10008451.BGIv1.0 annot-version=v1.0 ATGACTCCCGCCAGGCTGTTCGCCGGCCTCTTCCTCCTCCTCGCCGTCTACTGCGCCGTCGACCCGTTCAACCACAGCGCAATATCGGATTTCCCTGATT TCGAGTCCCACCCAGTTGAGATGCCGCCTTGGTCGCAGGTTCCGTTGGAGAGAGACGAGCAGGACTTGCTCCAGAAGTCGGAGATCAAGTTCCTGGGTCA GATTCAAGGGCCCGAGAGCTTGACTTTTGATCCTCTTGACCGTGGTCCGTACACCGGCGTCGCCGATGGTAGAGTCTTGTTCTGGAATGGCGACAAGTGG GTTGATTTCGCCTACACTTCCAACAATAGGTCAGAGATATGTGATCCTAAGCCATCACCACTGGCTTATTTGAAGAATGAGCACATCTGTGGCCGCCCAC TGGGGCTAAGGTTCGATAAGAAGACCGGTGATTTGTACATTGCAGATGCATATTTGGGGCTGATGAAGGTTGGCCCTGAAGGTGGATTAGCTACTTCAAT TGCTACTGAGGCAGAAGGGGTTCCGCTCGGGTTTACCAATGATCTTGACGTTGATGAAGATGGCACTGTTTACTTTACTGATAGCAGTACCAAGTTCCAG AGGAGGAACTTCATGCAGCTGGTTTTCTCAGCAGAAAACACCGGGAGGGTTCTCAAGTATGATCCCACCACAAAGAAAGCCTCTGTACTAATGAGCAATC TTCAGTTTCCAAATGGTTTGTCTCTAAGCAAGGACCGCTCCTTCTTTGTCTACTGTGAAGGATCACTTGGCATACTGCACAAGTACTGGCTAAAGGGCGA GAAGGCCGGAAAATCAGAAGTGCTAGCAGTTCTACCAGGGTTCCCGGACAACGTTCGGACCAACAAAGATGGAGATTTCTGGGTAGCAATCCATTGCCGA CGATCCTACTACACTTACTTGAGCGCCAAGTATCCGAGGGCGAGGACATTCCTGCTGAAGCTCCCGATTTCGGCCAAGATCCAGTTCCTGCTCCACATCG GCGGGAGGCCCCATGCTTTCGTGGTGAAGTACAGCCCGGAAGGGAAGCTGCTCAAGGTGTTGGAGGATCGTCAAGGGAAAGTGGTGAAAGCCATCAGTGA AGTTGAAGAACGAGATGGGAAGCTCTGGCTTGGAAGCGTATTGATGCCGTTCGTTGGTGTTTATAGCTTGGAGTGA
AA sequence Show only first row Show all	>Lus10008451 pacid=23163492 polypeptide=Lus10008451 locus=Lus10008451.g ID=Lus10008451.BGIv1.0 annot-version=v1.0 MTPARLFAGLFLLLAVYCAVDPFNHSAISDFPDFESHPVEMPPWSQVPLERDEQDLLQKSEIKFLGQIQGPESLTFDPLDRGPYTGVADGRVLFWNGDKW VDFAYTSNNRSEICDPKPSPLAYLKNEHICGRPLGLRFDKKTGDLYIADAYLGLMKVGPEGGLATSIATEAEGVPLGFTNDLDVDEDGTVYFTDSSTKFQ RRNFMQLVFSAENTGRVLKYDPTTKKASVLMSNLQFPNGLSLSKDRSFFVYCEGSLGILHKYWLKGEKAGKSEVLAVLPGFPDNVRTNKDGDFWVAIHCR RSYYTYLSAKYPRARTFLLKLPISAKIQFLLHIGGRPHAFVVKYSPEGKLLKVLEDRQGKVVKAISEVEERDGKLWLGSVLMPFVGVYSLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	0	1
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	1.7	0.9284
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	3.5	0.9180
AT3G62630			Protein of unknown function (D...		Lus10029855 [exp]	3.7	0.8835
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	5.3	0.8945
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10034513 [exp]	5.5	0.8937
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	6.2	0.8738
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	6.5	0.8878
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	7.1	0.8793
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	8.6	0.8535
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	9.3	0.9119

Compare expression of checked genes

Lus10008451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.