Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 539 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 532 / 0 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT4G27570 531 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 524 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 517 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 515 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 500 / 1e-175 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 489 / 2e-171 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 479 / 9e-168 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 474 / 9e-166 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013337 [exp] 477 / 3e-166 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 451 / 4e-156 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10040178 [exp] 441 / 6e-152 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 318 / 8e-104 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10013367 [exp] 258 / 7e-85 AT4G27570 144 / 1e-41 UDP-Glycosyltransferase superfamily protein (.1) Lus10039237 [exp] 232 / 1e-72 AT5G54010 240 / 5e-76 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 234 / 1e-71 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 229 / 2e-69 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 226 / 1e-68 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097900 [exp] 635 / 0 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 412 / 3e-141 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 343 / 7e-115 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 335 / 1e-110 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 236 / 2e-72 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 223 / 1e-67 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 218 / 3e-65 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 216 / 8e-65 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 214 / 7e-64 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 209 / 6e-62 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10008453 pacid=23163509 polypeptide=Lus10008453 locus=Lus10008453.g ID=Lus10008453.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTGTGAAACCAAAAAATTCCACATAGTGATGTTCCCATGGCTAGCAACTGGGCACATCACCCCATTCCTTCACCTCTCCAACACCCTAG CTAGCAAAGGCTTCACCATCACATTCATCCTCCCCAAAAAGGCAATCCAACAATTCTCCCGGTTCAACCAACACCCGAATCTCATTGATTTCCACCCCAT CACTCTTCCTCCCGTCGATGGCCTCCCTGCCGGAGTGGAGACCGCCTCTGAGGTCCCTATTGAGGTCACCCACTTTTTGTGCATTGCCATGGATCGAACT CGAGATCAGGTGGAAAAAATTATCCGTGGGACCAACCCTAAGGTAGTGGTGTATGATATGGCACATTGGGTATCTGACATCACTGCCTCGTTGGGGATTA AGAGCGTAAACTACACCGTCCTCTCTGCGGCTGCCGTTGCTTTTGCGGATGTTCCCGTTCGTGGAATTGTGAAGGGTAAGGAATTGACAGTGGATGAGTT GGCGGTACCTCCTCCGGGGTATCCTTCATCAACCATTGTGCTTCGCCCCCACGAGGGGAAGTTGTTGAGCTTCATCTTCTTTCCGTACGGTGAAGCGACG ACGTTTTGGGAGAGGATTAGTACGGGGATGAGGATGTGTGACGCTTTGGCTATTAGGACATGTGACGAGATCGAAGGGAAGTTGTGTGAGTACCTAGGGG AGCAATACAAGAAGAGGGTTTTTTTAACGGGACCAGTTTTAACTGAACCAGCCAATGATGTGGTTTCACTGGAAAACCAATGGATTGATTGGTTGGGGAA ATTCGAACCGGGGTCGGTTGTTTTTTGCGCCTTTGGTAGCCAAATAATGCTAGAAAAGAGCCAATTCCAAGAGCTAGTACTAGGTTTCGAATTATCCGGA CATCCGTTTTTAGTAGCACTAAAACCGCCAGCGGGGTCATCAACAATTAAAGAAGCACTACCAGAAGGGTTCGAGGAGAGGGTAAAGGGGAGAGGCATCA TCTGGGGCGAATGGGTTCAACAAGTCTTGATACTGAACCACCCGTCTGTCGGGTGCTTCGTAAACCACTGCGGGTTCGGGTCGATGTGGGAGTCGTTAAT GAGCGATTCTCAAATCGTGTTGGTCCCGCATTTAGGGGACCAAGTTTTGAACACTAGACTGTTGGCTGATGAGCTAAAGGTTGGTTTGGAAGTGGAAAGA GATGAGCAAGGTTGGGTTTCAAAGGAGAAGCTAAGTGATGCAATCAAATGTGTTATGGATCAAGGAAATGAGTTGGGTTGTTCACTAAGGAAGAATCATT CCAAGTGGAGAGGTGTGGTTTCTGATCCAGATTTCATGTCTAGCTACATTGACAAGTTTGTTCAAAATTTACATGATCTTGTCAAGTGA
AA sequence Show only first row Show all	>Lus10008453 pacid=23163509 polypeptide=Lus10008453 locus=Lus10008453.g ID=Lus10008453.BGIv1.0 annot-version=v1.0 MASSCETKKFHIVMFPWLATGHITPFLHLSNTLASKGFTITFILPKKAIQQFSRFNQHPNLIDFHPITLPPVDGLPAGVETASEVPIEVTHFLCIAMDRT RDQVEKIIRGTNPKVVVYDMAHWVSDITASLGIKSVNYTVLSAAAVAFADVPVRGIVKGKELTVDELAVPPPGYPSSTIVLRPHEGKLLSFIFFPYGEAT TFWERISTGMRMCDALAIRTCDEIEGKLCEYLGEQYKKRVFLTGPVLTEPANDVVSLENQWIDWLGKFEPGSVVFCAFGSQIMLEKSQFQELVLGFELSG HPFLVALKPPAGSSTIKEALPEGFEERVKGRGIIWGEWVQQVLILNHPSVGCFVNHCGFGSMWESLMSDSQIVLVPHLGDQVLNTRLLADELKVGLEVER DEQGWVSKEKLSDAIKCVMDQGNELGCSLRKNHSKWRGVVSDPDFMSSYIDKFVQNLHDLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	0	1
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	2.8	0.9961
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	4.0	0.9961
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	4.9	0.9961
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	5.7	0.8220
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	5.7	0.9946
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	6.3	0.9945
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	6.5	0.8930
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	6.9	0.9938
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	7.5	0.9924
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	8.0	0.9921

Compare expression of checked genes

Lus10008453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.