Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 54 / 5e-08 FMO1 flavin-dependent monooxygenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023941 [exp] 137 / 1e-37 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 135 / 1e-35 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 120 / 6e-31 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10014439 [exp] 88 / 5e-19 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10023944 [exp] 72 / 7e-14 AT4G38380 154 / 1e-41 MATE efflux family protein (.1) Lus10014441 [exp] 72 / 1e-13 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10013230 [exp] 61 / 4e-10 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 48 / 7e-06 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 47 / 1e-05 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143500 [exp] 126 / 3e-32 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 95 / 3e-21 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 92 / 2e-20 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 92 / 3e-20 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 83 / 2e-17 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 53 / 2e-07 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 49 / 5e-06 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008454 pacid=23163466 polypeptide=Lus10008454 locus=Lus10008454.g ID=Lus10008454.BGIv1.0 annot-version=v1.0 ATGGCGAATCAGATAGCGATAATCGGAGCGGGAATCAGCGGCCTGCTACCCTGCATATACGCCCTGTTGAAGAACTTGAGACCCATAGTCATCGAAGAAC TTGAGACCCATAGTCATCGAATCTCGAAACGACGTCGGAGGGGTCTGGACCAAGACACTCTCCACAACCAAACTCCAAATCCCAAAACCAAAGTTCCAGT TCTCAGACTTCCCATGGCCGGACTCCCTCACCGCCGACGAGGACCACATCCCGACCCACCATCAGGTGCTCGACCACTTGAAATCGTATTCGGAACATTT CGACCTTCACAGGCACATCCATCCAGCTCAACACAAAAGTGGTCGGGATCAACTACCAAGGCGTCTCGGAGGAGGAGATCAAATCTTGGAGTCCGTGGGA AGGTACTGGAGGAGCGTTTAGCTGTAATGGAGGGAGATGGGAAGTGGAAGGTTTTAGTCGAAATTATGAAACGGAAGTTTACGAAGTCGGGGGAAGGTGA TGCATTCAATGGAGTATTGGGAGGCGGGGAGGCGAGGAAGTTGGTGAAAGGCAAGAGAGTTGTTGTTGGTGGGTTGCAGAAGAATGCTCTCGATATTAAC GATACGATATACCTTACTTGCATGGAAGGAGAATGGGTGCATTGGCCAAACTGTTCTATCTCAATAGGTATTCAGAGCTACGGTTTCACAAACCTGGACA AGGGATCCTGCTCGGTTTCTTGGCCACAATTCTTCAACCACTCGCAGCTCGAACCTGTTCACGTCGAAGATGAAGTGTCGGTGGCTGAGGAGTTTCTCGA CAGCAACTTTAAGCTTCCAGAACTCAAGGAGATGGAAGAAGATGCATTGAGGTGGGATGCCCATCTCAAAGAATACTCGGGCGACAACTACACGAGGTTG TGCATGGACGCAGTCCATATATGGTACTGCGATCAGCTTTGCAAGGATATGGGCTGGAACCCAAGAAGGAAGAGTGGGCTTTCGGCTGAATTCTTCGAGC CTTACGGCCCATTGGACTACGTCTCCCCTTGA
AA sequence Show only first row Show all	>Lus10008454 pacid=23163466 polypeptide=Lus10008454 locus=Lus10008454.g ID=Lus10008454.BGIv1.0 annot-version=v1.0 MANQIAIIGAGISGLLPCIYALLKNLRPIVIEELETHSHRISKRRRRGLDQDTLHNQTPNPKTKVPVLRLPMAGLPHRRRGPHPDPPSGARPLEIVFGTF RPSQAHPSSSTQKWSGSTTKASRRRRSNLGVRGKVLEERLAVMEGDGKWKVLVEIMKRKFTKSGEGDAFNGVLGGGEARKLVKGKRVVVGGLQKNALDIN DTIYLTCMEGEWVHWPNCSISIGIQSYGFTNLDKGSCSVSWPQFFNHSQLEPVHVEDEVSVAEEFLDSNFKLPELKEMEEDALRWDAHLKEYSGDNYTRL CMDAVHIWYCDQLCKDMGWNPRRKSGLSAEFFEPYGPLDYVSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	0	1
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007249 [exp]	1.0	0.8543
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029557 [exp]	5.9	0.7016
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	6.0	0.7026
AT4G22310			Uncharacterised protein family...		Lus10032564 [exp]	8.5	0.7691
					Lus10022170 [exp]	10.2	0.7076
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	12.0	0.7278
					Lus10003442 [exp]	13.5	0.6552
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	17.0	0.6783
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	17.9	0.6719
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10036955 [exp]	20.9	0.7038

Compare expression of checked genes

Lus10008454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.