Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54200 125 / 8e-33 unknown protein AT3G13980 115 / 3e-29 unknown protein AT3G42800 73 / 2e-14 unknown protein AT5G12050 58 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037659 [exp] 174 / 3e-51 AT3G13980 193 / 9e-59 unknown protein Lus10015641 [exp] 140 / 1e-38 AT3G13980 176 / 3e-52 unknown protein Lus10025011 [exp] 101 / 1e-23 AT3G13980 115 / 1e-28 unknown protein Lus10026463 [exp] 88 / 3e-19 AT1G54200 107 / 7e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170500 [exp] 165 / 4e-47 AT1G54200 167 / 2e-47 unknown protein Potri.003G063400 [exp] 165 / 6e-47 AT1G54200 173 / 7e-50 unknown protein Potri.018G049900 [exp] 125 / 2e-32 AT1G54200 122 / 5e-31 unknown protein Potri.006G222700 [exp] 125 / 3e-32 AT1G54200 114 / 4e-28 unknown protein Potri.006G144700 [exp] 117 / 7e-30 AT3G13980 130 / 2e-34 unknown protein Potri.018G065000 [exp] 116 / 2e-29 AT3G42800 139 / 1e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008457 pacid=23155018 polypeptide=Lus10008457 locus=Lus10008457.g ID=Lus10008457.BGIv1.0 annot-version=v1.0 ATGGTATTTTATAGGGAGAAGAAGGCGGTGGATAACCTGAACCAGAAGAATAAGAATAACAAAAATTGTGGTGTGGGTGAGAAACAGAGTGGACTAGTTG GAGTTGGAGGAGTTGATCATCAACGCTGTCAAAACGGCTCGTTTAGGAGGAAATCCTCAACCGACTATTCTTCTAGTTGCAGCAGCTCCTCTGACTGGAC CGCCGACTTCTCTTCCTCCGACAACTCCGTTCCTACCCCCAGATCCAATCTCAACCGCATTCTACCCTCTCGACCTCCCCAACATAATCAGGAATCTACT AATTACAAGAAATCGGATGGCGTATGCGGCGGAGGAGGATTTGTGAAAAAGAAATCCCGAGCTTTGAAGAACCTTTACGTCGATTTGAAGCAACAGCCGA CCTCTCCCGGCCGCCGTCTCGCCAGCTTCCTCAATTCTCTCTTCACAGCCACCGCTACAACCAAAAAGGGCAAGATCAGCGGCGGACAACACCAAATTCC ACCTACTTCCTCTGCTTACTCCTCGGCTTCATCGTTTTCCCGCTCCTGCTTGAGCAAAACTCCGTCGTCCTCCCGTGGATCCGCCGGGAAGCGCTCGGTG AGGTTTTACCCTGTGAGTGTCATCGTCGACGAGGATTCCAGGCCGTGTGGACACAAGAACGTGTACAGTGACGGCAAGGACGTGATGGCGGTGGCAACGG CGGGAATTGATGAGCGGGCGAAAGAGGAACTCAAGTATCGGATTACGTGCGAGAGCCGGCGCGTGGAGGAAGTTGCTCGGGAGCTACTGAAGAGTTATAA TCAGAAGAAGAGCAGTACCACCGTTAAGGAAGATCTGTTTTTCCGCGGGGGCAGAGATGAAGAGGAGGATGACGATGATGAAGAATGGAGCTGTGTTAGT TCGGACTTGTTTGAGCTGGACAATCTGTCCTCAATTGAAGGAATTGAAAGGTATAGAGAGGAACTGCCTGTTTACGAGACGACTCATTTCTCTCACAACC AATCACGCCATTGCCAACGCCTTGTTTGCAGGCCATAA
AA sequence Show only first row Show all	>Lus10008457 pacid=23155018 polypeptide=Lus10008457 locus=Lus10008457.g ID=Lus10008457.BGIv1.0 annot-version=v1.0 MVFYREKKAVDNLNQKNKNNKNCGVGEKQSGLVGVGGVDHQRCQNGSFRRKSSTDYSSSCSSSSDWTADFSSSDNSVPTPRSNLNRILPSRPPQHNQEST NYKKSDGVCGGGGFVKKKSRALKNLYVDLKQQPTSPGRRLASFLNSLFTATATTKKGKISGGQHQIPPTSSAYSSASSFSRSCLSKTPSSSRGSAGKRSV RFYPVSVIVDEDSRPCGHKNVYSDGKDVMAVATAGIDERAKEELKYRITCESRRVEEVARELLKSYNQKKSSTTVKEDLFFRGGRDEEEDDDDEEWSCVS SDLFELDNLSSIEGIERYREELPVYETTHFSHNQSRHCQRLVCRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13980			unknown protein		Lus10008457 [exp]	0	1
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	3.9	0.7873
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	7.6	0.7968
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	10.1	0.7714
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	10.3	0.7943
AT3G14460			LRR and NB-ARC domains-contain...		Lus10002737 [exp]	11.7	0.7246
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	12.5	0.7833
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	14.7	0.7659
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Lus10035261 [exp]	14.7	0.7169
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	17.5	0.7774
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	22.0	0.7537

Compare expression of checked genes

Lus10008457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.