Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17600 76 / 4e-17 RING/U-box superfamily protein (.1) AT3G16720 72 / 6e-16 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G03550 73 / 7e-16 RING/U-box superfamily protein (.1) AT2G20030 71 / 3e-15 RING/U-box superfamily protein (.1) AT1G72220 71 / 3e-15 RING/U-box superfamily protein (.1) AT3G18930 69 / 2e-14 RING/U-box superfamily protein (.1.2) AT4G28890 68 / 4e-14 RING/U-box superfamily protein (.1) AT5G10380 67 / 4e-14 ATRING1, RING1 RING/U-box superfamily protein (.1) AT1G53820 67 / 9e-14 RING/U-box superfamily protein (.1) AT4G15975 66 / 9e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000885 [exp] 127 / 8e-39 AT2G20030 79 / 1e-18 RING/U-box superfamily protein (.1) Lus10013618 [exp] 73 / 4e-16 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10012745 [exp] 72 / 9e-16 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10034953 [exp] 72 / 2e-15 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 71 / 3e-15 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10029456 [exp] 67 / 3e-15 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10000710 [exp] 71 / 5e-15 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10005954 [exp] 70 / 9e-15 AT3G04020 111 / 7e-28 unknown protein Lus10024881 [exp] 69 / 1e-14 AT1G04360 153 / 2e-43 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144200 [exp] 77 / 2e-18 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 72 / 1e-15 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 72 / 2e-15 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 72 / 2e-15 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 72 / 2e-15 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 71 / 3e-15 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 71 / 4e-15 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 68 / 5e-15 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 69 / 1e-14 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 69 / 1e-14 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008458 pacid=23155030 polypeptide=Lus10008458 locus=Lus10008458.g ID=Lus10008458.BGIv1.0 annot-version=v1.0 ATGATAACAATCTACTACGGCGTTGTGGTTGGTGGAGTCACATGTACTGTATTTGCAATTTTCCTTCTGACAACGAAGTGGCGTTGGTGGTTGCCTCACC CAGAAGCAATCAACAGGTCCATGATTATGTCTGAAAGAAAAGACAAGTTATTTGTCAAAGGATCATTTACAGTTTCCACATTCCAGTATAATAAGAAAGA AAAAGAGAATGAAGAAGAAGAAGATAGTAGAGAAGCGGCAGCAGCTTGTTGTGCAGTGTGCTTGTCAAGTTTTGAAGAGTTGGAGTACATAAGGTTGCTT CCAAACTGCAACCACTCTTTCCACCTGCCTTGTATCGATATGTGGCTCTACTCTCATCCTCACTGCCCTCTTTGCCGCACTTGTGTCAACACATTGGAAC CAGAAACTGATTAG
AA sequence Show only first row Show all	>Lus10008458 pacid=23155030 polypeptide=Lus10008458 locus=Lus10008458.g ID=Lus10008458.BGIv1.0 annot-version=v1.0 MITIYYGVVVGGVTCTVFAIFLLTTKWRWWLPHPEAINRSMIMSERKDKLFVKGSFTVSTFQYNKKEKENEEEEDSREAAAACCAVCLSSFEELEYIRLL PNCNHSFHLPCIDMWLYSHPHCPLCRTCVNTLEPETD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	0	1
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	1.0	1.0000
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	2.0	1.0000
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	2.2	0.9978
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	2.8	0.9961
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	2.8	0.9986
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	3.0	0.9987
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	3.3	0.9837
					Lus10008153 [exp]	3.5	0.9800
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	4.2	0.9965
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	4.5	0.9905

Compare expression of checked genes

Lus10008458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.