Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14000 442 / 1e-155 ATBRXL2, BRX-LIKE2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) AT1G54180 440 / 2e-155 ATBRXL3, BRX-LIKE3 ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, BREVIS RADIX-like 3 (.1.2) AT5G20540 375 / 3e-129 ATBRXL4, BRX-LIKE4 BREVIS RADIX-like 4 (.1) AT1G31880 269 / 7e-88 BRX, NIP3;1, NLM9 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) AT2G35600 253 / 7e-82 BRXL1, ATBRXL1, BRX-LIKE1 ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BREVIS RADIX-like 1 (.1) AT2G21030 114 / 3e-30 unknown protein AT5G12350 91 / 9e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 86 / 4e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 82 / 1e-16 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 71 / 3e-13 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000884 [exp] 687 / 0 AT3G14000 439 / 3e-154 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10017164 [exp] 346 / 8e-118 AT5G20540 457 / 1e-161 BREVIS RADIX-like 4 (.1) Lus10021565 [exp] 325 / 1e-109 AT5G20540 420 / 1e-146 BREVIS RADIX-like 4 (.1) Lus10030349 [exp] 243 / 5e-78 AT1G31880 410 / 5e-144 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10007898 [exp] 221 / 5e-70 AT1G31880 363 / 1e-126 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10036030 [exp] 91 / 1e-19 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 89 / 4e-19 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10028600 [exp] 84 / 2e-17 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10016335 [exp] 83 / 4e-17 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G170800 [exp] 494 / 5e-176 AT3G14000 467 / 2e-165 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.003G063200 [exp] 482 / 2e-171 AT3G14000 492 / 4e-175 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.006G144900 [exp] 425 / 1e-148 AT5G20540 422 / 2e-147 BREVIS RADIX-like 4 (.1) Potri.018G064900 [exp] 400 / 5e-139 AT5G20540 426 / 1e-148 BREVIS RADIX-like 4 (.1) Potri.001G131800 [exp] 300 / 7e-100 AT1G31880 462 / 4e-164 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.003G101500 [exp] 285 / 6e-94 AT1G31880 434 / 8e-153 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.001G026900 [exp] 86 / 8e-18 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 86 / 9e-18 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 83 / 5e-17 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.T124906 [exp] 82 / 7e-17 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3
Representative CDS sequence Show only first row Show all	>Lus10008459 pacid=23155013 polypeptide=Lus10008459 locus=Lus10008459.g ID=Lus10008459.BGIv1.0 annot-version=v1.0 ATGCTGACGTGTATAGCTTGTTCAAAGCAGCTTAATGGCGGAAACAATGGATCTATTGAACAGAGAAGGGAGAGGGATGATAATGATTTTGACGACGATT ATGCTATGGAGACACCCAGGACGAAGCAGACTATTAGGAATCTCACTGCTCAGATAAAAGACATGGCGATAAAGGCGTCAGGAGCATACAAAAATTGCAA GCCGTGCTCTGGGTCGTCAAACAATAATAAGAAAGATGGTGAGTCCGATGGTGCCTCAGATTCGGGCAGGTTCCAATGCTCGTACCGTAGGACGGGGAAT TCGGAGATGGAGTCAAGGCTAAAAGGGGGGATGTCAAGTGGTGAAGGAACACCGGCATCTGGCAGCGGTAGGACGGAATCTGTGGGGTTCACAGAGGATG ATGAACCTAAGGAATGGGTCGCACAAGTGGAACCTGGAGTCCTCATCACTTTTGTTTCCTTACCTGATGGTGGCAATGATCTTAAGAGGATTCGATTCAG CCGCGAAATGTTCAACAAATTGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTAATGGAGCTTTACAACGTTCAACAGTTCAGTCAGCAAGCA GTCCCATTTCCAACCCCTTCAAGATCGGAGGATGAGAATGCAAAGCCTGAATCTGCAAAAGACAGCCCCATGACTCCACCACTAGACAAAGAACGGCCAC GCAAATCTCGTCATCCAAAAGGAATTGGCCACTCCTCCGAACACCAAATGATGCAATCACGGAAATACTGTGATAGCCCAGGGGGCGGCCTTGCTTCAAC ACCAAAGCTATCTGACATGAGTGGAGTAAAAACAGAAACATCATCCATGGATGTCTCTGCTAGGACGAGTTCATCCTCGAGAGAAGTAGATCACTCAGGA GAGATGTCACAGAGCAACACAAGTGAAACAGAAGCTGAATGGGTGGAGCAGGATGAACCAGGAGTGTACATCACAGTCAGAGCACTTCCAGGTGGAGCAC GGGAACTTAGGCGCATCAGATTCAGCCGAGAAATGTTTGGAGAAATGCAAGCAAGGGTGTGGTGGGAAGAGAACAAAACCAGGATCCAACAACTTTACTT GTGA
AA sequence Show only first row Show all	>Lus10008459 pacid=23155013 polypeptide=Lus10008459 locus=Lus10008459.g ID=Lus10008459.BGIv1.0 annot-version=v1.0 MLTCIACSKQLNGGNNGSIEQRRERDDNDFDDDYAMETPRTKQTIRNLTAQIKDMAIKASGAYKNCKPCSGSSNNNKKDGESDGASDSGRFQCSYRRTGN SEMESRLKGGMSSGEGTPASGSGRTESVGFTEDDEPKEWVAQVEPGVLITFVSLPDGGNDLKRIRFSREMFNKLQAQRWWAENYDKVMELYNVQQFSQQA VPFPTPSRSEDENAKPESAKDSPMTPPLDKERPRKSRHPKGIGHSSEHQMMQSRKYCDSPGGGLASTPKLSDMSGVKTETSSMDVSARTSSSSREVDHSG EMSQSNTSETEAEWVEQDEPGVYITVRALPGGARELRRIRFSREMFGEMQARVWWEENKTRIQQLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	7.0	0.8404
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	8.8	0.8123
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	9.8	0.7768
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	10.0	0.8128
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	10.8	0.8325
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	11.5	0.8285
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10001798 [exp]	11.8	0.8022
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	15.1	0.7930
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	16.7	0.7403
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	17.7	0.8106

Compare expression of checked genes

Lus10008459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.