Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01580 68 / 7e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 64 / 3e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 62 / 1e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 61 / 6e-12 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT5G66980 55 / 1e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 52 / 1e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 50 / 3e-08 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT5G60130 46 / 1e-06 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT2G35310 45 / 4e-06 B3 Transcriptional factor B3 family protein (.1) AT2G24690 44 / 1e-05 B3 REM11 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003313 [exp] 197 / 2e-66 AT4G01580 63 / 5e-13 AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 84 / 7e-20 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 83 / 8e-20 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 82 / 3e-19 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032389 [exp] 75 / 6e-18 AT3G18990 56 / 6e-10 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 77 / 8e-18 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 76 / 1e-17 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 76 / 1e-17 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 74 / 2e-16 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 81 / 7e-19 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 81 / 1e-18 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 71 / 1e-15 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 71 / 3e-15 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 69 / 2e-14 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 61 / 6e-12 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 58 / 3e-11 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 56 / 5e-10 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 56 / 6e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 52 / 2e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10008460 pacid=23155031 polypeptide=Lus10008460 locus=Lus10008460.g ID=Lus10008460.BGIv1.0 annot-version=v1.0 ATGGAGTTTCCAAGAGAGGAGGATATTGTCCAGCCACTCAAGTTCTTCAAGATTATACGTAGAGAATCCCTGAAAGATAAGAAACTAATGATTCCTAGGG AGTTTGTGAGACAATGTGGAAGGGACCTTAAAGGCAAAGCAACCCTTTTGGCCCCCGACGGTTTGAGATGGGATATGAAGATTGTCAAAGATGATGGTGA TGATAGGAACCTCAAGTTTTGGTTCAAGAATGGGTGGCAAGCTTTTGCTGAGTACTACTCCTTGTCCCATGGAGAGTTCATATCTTTTCAGTACAATGGT GGAAGAAACACCAGCTCGCTTGAGTTCTCTATCACCATATTTGATGAGAAGGCAGAGAAAGAGAGAGACTATCCATCAATGGAGTGA
AA sequence Show only first row Show all	>Lus10008460 pacid=23155031 polypeptide=Lus10008460 locus=Lus10008460.g ID=Lus10008460.BGIv1.0 annot-version=v1.0 MEFPREEDIVQPLKFFKIIRRESLKDKKLMIPREFVRQCGRDLKGKATLLAPDGLRWDMKIVKDDGDDRNLKFWFKNGWQAFAEYYSLSHGEFISFQYNG GRNTSSLEFSITIFDEKAEKERDYPSME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10008460 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	4.6	0.7252
					Lus10035120 [exp]	6.8	0.7401
					Lus10016118 [exp]	14.0	0.6517
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	14.5	0.6517
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	17.6	0.7308
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	23.0	0.6227
AT5G14230			unknown protein		Lus10022339 [exp]	27.4	0.6633
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	27.9	0.5805
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	28.9	0.6352
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	31.6	0.6679

Compare expression of checked genes

Lus10008460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.