Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20490 776 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 739 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G54560 682 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 651 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G43900 580 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 576 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G31900 566 / 4e-179 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G28710 554 / 3e-175 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT3G58160 521 / 3e-165 XI-16, MYA3, ATXIJ, ATMYOS3, XIJ MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G20290 510 / 7e-159 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003315 [exp] 1089 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 794 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10005521 [exp] 706 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10017160 [exp] 669 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 570 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 562 / 7e-180 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10033864 [exp] 522 / 1e-174 AT1G54560 843 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10043153 [exp] 555 / 3e-174 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10014753 [exp] 528 / 1e-170 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199200 [exp] 903 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G145700 [exp] 821 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 734 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 726 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.009G025300 [exp] 630 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.002G254300 [exp] 625 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.001G233100 [exp] 618 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 582 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.002G041800 [exp] 526 / 5e-168 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1) Potri.006G220000 [exp] 471 / 4e-144 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0010 [flax] [poplar] SH3 PF02736 [flax] [poplar] Myosin_N Myosin N-terminal SH3-like domain CL0010 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10008461 pacid=23155023 polypeptide=Lus10008461 locus=Lus10008461.g ID=Lus10008461.BGIv1.0 annot-version=v1.0 ATGGCTAGCCATATAATAGTGAAATTTAACTCTATGTATTGCAAGTATAATCCGGTTTTATTACTAATATATCCCGCTGCACCAGACAACATAATTGTTG GTTCTCATGTGTGGATTGAAGATCCCAAGTTGGCATGGATTGATGGTGAAGTTACTAGGATAAGTGGCAAAGACGTCCATGTACAAACTACGAATGGGAA AAATGTGGTTACAAGTATATCAAAAGTATTTCCCAAGGACACTGAAGCCCCACCTGGGGGCGTGGATGACATGACCAAGCTTTCATATTTACACGAACCT GGAGTTCTGCAAAATCTGGCTACTAGATATGAACTTAATGAAATCTATACATACACCGGAAATATCCTAATTGCTGTCAATCCGTTTCAAAGATTACCCC ATCTCTATGATACTCACATGATGGAACAGTATAAAGGTGCTGCATTTGGGGAGCTAAGTCCTCATGTCTTTGCAGTGGCAGATGCTGCATACAGGGCAAT GATTAATGACGGAAAAAGTAATTCAATCCTGGTTAGTGGTGAAAGTGGTGCCGGCAAAACTGAGACTACAAAGATGCTCATGAGATATCTTGCCTTCTTA GGAGGGCGATCTGGAGTAGAAGGAAGGACAGTTGAACAACAAGTTCTGGAGTCAAATCCTGTCCTTGAAGCATTTGGTAATGCCAAAACTGTTCGCAACA ATAACTCAAGTCGGTTTGGAAAGTTTGTGGAGATCCAATTCGACAAGAGCGGCAGAATATCTGGTGCTGCGATCAGGACTTATCTGCTTGAGAGATCTCG GGTGTGCCAAATTTCTGATCCAGAAAGAAACTATCATTGCTTTTATCTTCTATGTGCAGCACCAGCTGAGGTTAAAGAAAAATACAAGTTGGGGAGCCCA AAATTTTTCCATTATTTGAATCAATCAAGTTGTTATGAGCTGGATGGGATAAATGATGCCCATGAGTACCTCGAAACCAGAAGAGCAATGGATATAGTTG GGATTAGTGAAGAAGAACAGGTGAATTATCAAGCCAATCAGTTTTTGGATAAAAATAAGGATTATGTTATAGCTGAACATCAAGCTCTGATGACTGCTTC TCAATGCCACTTTGTTGTGGGATTGTTCCCTACACTTAAAGAAGAATCATTGAAGTCATCTAAGTTTTCTTCCATTGGTTCTCGGTTCAAGCTACAACTT CAATCTCTGATGGAGACCTTGAGTGTGACGGAACCCCACTACATTAGATGTGTGAAGCCTAATAATGTTCTGAAGCCTGCCATTTTTGAGAGCGTCAATA TCATTCACCAGTTACGTTGTGGGGGTGTTCTTGAGGCAATTAGGATTAGCTGTGCTGGATACCCTACAAGGCGAACCTTTTATGAGTTTCTTAATCGTTT TGGTCTTCTGGCTCCAGAAGTCTTAGATGGAAATTATGATGATAAGGTTGCATGCCAACTGATTCTCGATAAAAAGGGACTGAAAGGATACCAGATAGGC AAGACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAGTTGGATGCTCGGAGAGCAGAGGTACTTGGAAATGCAGCCAGAATCATCCAGCGACAAATCC ACACTCATTTTGCTCGCAGGGAGTTCATTTCTTTGAGAAAAGAAGCTATGGAGCTTCAGTCTTATATACGAGGTAACAAGGCCCGCAAAGTGTTCGAGCA TTTGAGGAGGGAAGCAGCTTCTGTAAAGATTCAGAAAAATTTCCGTCTCTTTGTTGCCAGAAAATCTTACTTAATGAAACGATCATCTGCAATCACATTG CAGACTGGATTAAGGGCAATGGCTGCACGCAATGAGTTCAGGTTCAGAAAACAAACTAAAGCTGCCACTGTAATTCAGGCTGACTGGCGTAGCTATCAAG CTCGTTCCTATTATAGACATCTTAAGAAGGCTACAATTGCTACACAATGTGGGTGGAGATGCAGAGTTGCTAGAAGAGAGCTCAGAATGCTAAAAATGGC TGCTAGAGACACTGGAGCTCTTAAAGAAGCAAAGGATAAGTTGGAAAAGCGTGTTGAAGAACTTACGTGGCGCCTTCAATTGGAAAAACGACTGAGGACT GATCTCGAGGATGCTAAATCTCAAGAAGTTGCCAAGCTTCAAGATGCACTAAAAGTTATGCATTCACGAGTTGAAGAGGCCAAGGCTTTGGTTTTTAAGG AACAGGAGGCAGCACAAAAAGCTATTCGAGAAGCACCTCCAGTTATTAAGGAAACCCCTGTTATAGTTGAAGACACAGAGAAAGTCCACTTTTTAACTGC TAAAGTTGAAAACTTGGAGGCCTTACTAGTCTCTCAAAGACGAGAAGCAGAAGAGGCCAAACAAGCATGCACAGCCGCCCAGTCTCGGAGTGAACAGCTT AGTAAGAAGCTCCAAGATTCAGAAAAGAAGGTGGATCAACTTCAGGATTCAGCTCAAAGGTTTGCGACAGTTGTCCGATCCCTAAATTTTTCAGTCGACC CTAGAACCCCAGAGAATGGAAGTATCCCACATTCAGAAGCAAGGAGAACACCGGATTCAATACTGGCTTTGCCGGGCACACGGGAGGCTGAAAATGAGGA CAAGCCCCAGAAGTCTCTTAATGAAAAGCAGCACGAAATACAAGACCTGCTACTCAAATGTGTATCTCAAGATCTTGGATTCTCTGGCGGCAGACCTGTT GTTGCTTCTCTGATATACAAATGTCTTCTTCAGTGGAGATCGTTTGAAGTTGAAAGGACTAGTATTTTTGACCGCATTATTCAGGCGATTGGCTCAGCAA TTGAGGTACCTCCGTTCCTAGTACGGAAGGTAATCACCCAGATATTCTCATTCATCAACGTTCAGTTATTTAACAGTCTTCTGTTGCGTCGAGAGTGTTG CTCATTTAGCAATGGAGAGTATGTAAAGACAGGGTTGGCTGAATTGGAACAGTGGTGCCATGATGCAACTGACGAGGTGATACATCAAAAGCCAAAAAAG AACTTGAAAGAAATAACCACAGATCTTTGTCCAGTTTTAAGCATACAACAATTATACAGAATCAGTACCATGTACTGGGATGACAAATACGGGACACATA GTGTGTCGTCGGAGGTCATTTCCAACATGAGAATAATGATGACAGAGGATACGAACAATGCTGTAAGCAGCTCGTTCTTATTGGATGACGATTCAAGCAT ACCATTTACTGTAGACGACATCTCCAAGTCAATTGAGCAAGTAGAAGTTGCTGATATTGAACCTCCACCTCTGATCCGTGAAAACTCAGGCTTCTCGTTC TTGTTACAACACACGGACTGA
AA sequence Show only first row Show all	>Lus10008461 pacid=23155023 polypeptide=Lus10008461 locus=Lus10008461.g ID=Lus10008461.BGIv1.0 annot-version=v1.0 MASHIIVKFNSMYCKYNPVLLLIYPAAPDNIIVGSHVWIEDPKLAWIDGEVTRISGKDVHVQTTNGKNVVTSISKVFPKDTEAPPGGVDDMTKLSYLHEP GVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADAAYRAMINDGKSNSILVSGESGAGKTETTKMLMRYLAFL GGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEVKEKYKLGSP KFFHYLNQSSCYELDGINDAHEYLETRRAMDIVGISEEEQVNYQANQFLDKNKDYVIAEHQALMTASQCHFVVGLFPTLKEESLKSSKFSSIGSRFKLQL QSLMETLSVTEPHYIRCVKPNNVLKPAIFESVNIIHQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGLLAPEVLDGNYDDKVACQLILDKKGLKGYQIG KTKVFLRAGQMAELDARRAEVLGNAARIIQRQIHTHFARREFISLRKEAMELQSYIRGNKARKVFEHLRREAASVKIQKNFRLFVARKSYLMKRSSAITL QTGLRAMAARNEFRFRKQTKAATVIQADWRSYQARSYYRHLKKATIATQCGWRCRVARRELRMLKMAARDTGALKEAKDKLEKRVEELTWRLQLEKRLRT DLEDAKSQEVAKLQDALKVMHSRVEEAKALVFKEQEAAQKAIREAPPVIKETPVIVEDTEKVHFLTAKVENLEALLVSQRREAEEAKQACTAAQSRSEQL SKKLQDSEKKVDQLQDSAQRFATVVRSLNFSVDPRTPENGSIPHSEARRTPDSILALPGTREAENEDKPQKSLNEKQHEIQDLLLKCVSQDLGFSGGRPV VASLIYKCLLQWRSFEVERTSIFDRIIQAIGSAIEVPPFLVRKVITQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCHDATDEVIHQKPKK NLKEITTDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISNMRIMMTEDTNNAVSSSFLLDDDSSIPFTVDDISKSIEQVEVADIEPPPLIRENSGFSF LLQHTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	0	1
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	5.7	0.8674
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	6.3	0.8857
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	6.5	0.8919
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	7.5	0.8890
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	10.0	0.8841
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	16.1	0.8824
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	16.2	0.8750
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	20.5	0.8885
AT1G02080			transcription regulators (.1.2...		Lus10042876 [exp]	20.8	0.8824
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	21.4	0.8484

Compare expression of checked genes

Lus10008461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.