Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29840 775 / 0 TS, MTO2 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT1G72810 751 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003317 [exp] 848 / 0 AT4G29840 858 / 0.0 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10003316 [exp] 81 / 4e-19 AT1G72810 61 / 6e-13 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199100 [exp] 781 / 0 AT1G72810 836 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Potri.003G033200 [exp] 780 / 0 AT1G72810 833 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10008462 pacid=23155029 polypeptide=Lus10008462 locus=Lus10008462.g ID=Lus10008462.BGIv1.0 annot-version=v1.0 ATGGAGGCGCTCAAGGCCTTTCCAGGATCTTACTGGAAGTCTCTGTTCGATTCCCGCGTGGGGAAGACGACTTGGCCGTATGGGTCAGGGGTTTGGTCCA AGAAAGAGTGGGTCTTGCCCGACATCTCTGACGATGATATCGTCAGTGCGTTTGAAGGTAACTCGAATCTCTTCTGGGCTGAGAGGTATGGTAAGCAGTT TTTTGGTATGAACGATTTGTGGGTGAAGCATTGCGGGATCAGCCATACGGGTAGCTTTAAAGATTTGGGGATGACTGTTTTGGTGAGTCAAGTGAATAGG TTGAGGAAAATGAACAAACCTGTTGTAGGAGTTGGCTGTGCTTCCACTGGAGACACTTCTGCTGCTTTATCTGCTTATTGTGCTTCTGCTGGTATTCCTT CTATTGTATTCTTGCCTGCAAATAAGATCTCCATGGCCCAATTGGTTCAGCCAATTGCCAATGGTGCTTTTGTCCTCAGTATTGATACTGATTTTGATGG TTGCATGCAACTGATTAGGGAGGTTACAGCTGAATTGCCTATTTATTTAGCTAACTCTCTTAACAGTTTGAGGCTAGAAGGACAGAAAACTGCTGCCATT GAAATACTGCAGCAGTTTGATTGGGAAGTCCCTGAATGGGTGATTGTTCCTGGAGGTAACCTGGGCAATATCTATGCGTTTTACAAAGGGTTTCATATGT GTAAAGAATTAGGGCTTGTGGCTAGAATTCCTAGGCTAGTCTGTGCACAAGCTGCAAATGCAAACCCTCTTTACTTGTACTACAAATCCGGGTGGAAAGA CTTTAAGTCAGTGAAGGCCAGCAGTACTTTTGCATCTGCTATTCAGATTGGGGATCCGGTTTCGATTGATAGAGCTGTTTATGCTTTGAAAAAGTGTGAT GGGATAGTGGAGGAAGCGACAGAGGAGGAACTAATGGATGCAATGGCGCAAGCTGATTCAACGGGGATGTTCATATGTCCACATACTGGTGTGGCATTGA CTGCACTGAGTAAGCTAAGGAATGCTGGGATTATAGGTCCTAATGACAGGACTGTGGTGGTGAGTACTGCACATGGTTTGAAGTTTACGCAGAGTAAGAT CGACTATCACTCCACCGATATTAAAGACATGGCTTGTAGGTTTGCTAATCCACCTGTGAATGTAAAGGCTGATTTTGGTTCAGTGATGGATGTTCTCAAG AAGTATCTGTGGAGTAATGCCCATTAG
AA sequence Show only first row Show all	>Lus10008462 pacid=23155029 polypeptide=Lus10008462 locus=Lus10008462.g ID=Lus10008462.BGIv1.0 annot-version=v1.0 MEALKAFPGSYWKSLFDSRVGKTTWPYGSGVWSKKEWVLPDISDDDIVSAFEGNSNLFWAERYGKQFFGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNR LRKMNKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAI EILQQFDWEVPEWVIVPGGNLGNIYAFYKGFHMCKELGLVARIPRLVCAQAANANPLYLYYKSGWKDFKSVKASSTFASAIQIGDPVSIDRAVYALKKCD GIVEEATEEELMDAMAQADSTGMFICPHTGVALTALSKLRNAGIIGPNDRTVVVSTAHGLKFTQSKIDYHSTDIKDMACRFANPPVNVKADFGSVMDVLK KYLWSNAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10008462 [exp]	0	1
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	2.0	0.8530
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	3.9	0.8574
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10014962 [exp]	4.7	0.8452
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	6.8	0.8583
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	6.9	0.8727
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	7.5	0.8415
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	8.1	0.8493
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	9.8	0.8490
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	10.6	0.8490
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	12.5	0.8451

Compare expression of checked genes

Lus10008462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.