Plant FIBer expression Database

Lus10008464 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72790 89 / 2e-18 hydroxyproline-rich glycoprotein family protein (.1)
AT5G57070 66 / 6e-11 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006024
[exp]
548 / 0 AT1G72790 122 / 3e-29 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G198900
[exp]
126 / 1e-30 AT1G72790 181 / 7e-50 hydroxyproline-rich glycoprotein family protein (.1)
Potri.006G145900
[exp]
59 / 6e-09 AT5G57070 100 / 3e-22 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Lus10008464 pacid=23155017 polypeptide=Lus10008464 locus=Lus10008464.g ID=Lus10008464.BGIv1.0 annot-version=v1.0
ATGGAAGACGATGACATGGCATCACCTTTCTGGCTTCAAACACCCCAAGACCGCCGTCGCTTTCGCCGCCGCCGACGAAACATTTCCTCTGTCTTCCTCA
ACTCAGGCCTCCTCCTCACCCTCCTTCTCCTCATAGCTTGTCTTTTCATCTTCCTTATAATCCCTTCTTTCCTCTCCTTCACTTCCCAAATCTTGAGACC
GCATTCACTCAAGAAAAGTTGGGACTCCCTCAACTTAGTCCTCGTCCTCTTCGCCATTATCTGCGGCTTTCTCAGTCGTAATGGACTCCAGAGGCCCAAC
AGCACCGCCTACCAATACCCTGCTCCTTCCGCCGCCACGACTAGTGCAACGACTTCTAGTTACTATGCAGATCCAAACTATCATCAATCGGCTGCCAAAG
TATCATTATCGCCGAGGAGATTCTATGATTATAGCCAGAATCAGGACCGATTGACTCCATTCGGCGGCGGCGACGGTTTGAATAGGCTGAGAAGCTTCAA
CTCCTATCCAGATCTGAGACACGAATCGCTGTGGATCAGGGATGGTGGAGATGATCAATGGCGATTTTATGACGATATTCATGTTAGGGATTACCGGTTT
CCTTCCTTGGATGAGATTCGAAGAGAGGAACAAGCAGTGGAGGAAAAGGAGAAGGAGATAGATAAGCTGGAAGATGCTAAAGATATTGCCGTCGATACCT
GTACGGCGGTCAAGGATGACAAGGACAAGAGGGAGAAGCTGGAGGATGCTCAGTCCGATCCACTTCCGATGAATTTGCCTCCTCCACCTGTTGCAGCTCC
GATGGATTTGCCGGCCAAAATTGGAAAGAAGAAAGTGCAGAAGACGTATCGCTCTGTTGCACAGTCTAAAAGTGGAGTTGACGAATGGAAAGACACGGAC
ATGGAGGATTTCTATAAACGGAAGCCGCCGTCGTCATCGGTACCCAAACCGGCTCCGTCGCAGACTACAGCTAGAAGAAAAGGTAAGAGGAACATTCACC
GTCAAGAGATTGGACAGAGTATAGTTGAAGAAGAGAAGACTGTGGAAGAAATCAAGTATGTCTATCTGCCACCACCATCACCGGCGCCTCCTCCACCTCC
TCCGCCACCAGAGAAGAAGAAGAGAAGTAAGGATTTCTTAATTTCTCTCAGACGAAAGAAGAAGAAGAAGCAGAGGCAAAACAGCGTTGAAAACCTCGCA
AGCTTGTTCGATCCGGAGTCTGAATTTCCGGCTCCATCCTCCATCCCACCTTCATCGCCTCTACCTCCACCTCCGCCACCTCCACCCCCTCCGCATTTCT
TTCAGAATCTCTTCCCTCCGAAGAGAGGAAAGTCCAAAAAAATCCACTCAGTGTCAGTTGCACCACCTCCGCCGCCACCTCCTCCGCGACCCTCGAGCGA
AGTTTATCTTTCCAAGAGCGTGCGGCGACCGTCCGGATCACGAATCCAATCTGAACGACCTCTGGCAAGTGCGTACAGACCTCCGAAGCCGGTGAAGACG
AGTAGTTTTGGAAGCGTGGAAGACAATGCGGAGAGCGGTGCGTCGCCGTTGATTCCGATACCGCCACCGCCACCTCCTCCGCCATTTAAGATGCCAGCGT
GGAAGTTCGAGGTTCGCGGGGATTACGTGAGAGTAGCCAGCTTTAACAGTTCGCGAAGTGGCTCGCCCGATCTGGACAGTGAGGATCCCTCCGACAGGGA
ATCGAGTCCAATGGCGGCAGCGGCGGTGGCATCGCCGCTGTTCTGCCCTAGTCCGGACGTGAACACGAAGGCCGATAATTTCATAGCGAGGTTCAAAGCT
GGTCTAAAGTTGGAGAAGGTGAATTCTGGGAAGGGAAAGTCCAATCTCGGCCCATCAGAAGGCCCAAATTGA
AA sequence
>Lus10008464 pacid=23155017 polypeptide=Lus10008464 locus=Lus10008464.g ID=Lus10008464.BGIv1.0 annot-version=v1.0
MEDDDMASPFWLQTPQDRRRFRRRRRNISSVFLNSGLLLTLLLLIACLFIFLIIPSFLSFTSQILRPHSLKKSWDSLNLVLVLFAIICGFLSRNGLQRPN
STAYQYPAPSAATTSATTSSYYADPNYHQSAAKVSLSPRRFYDYSQNQDRLTPFGGGDGLNRLRSFNSYPDLRHESLWIRDGGDDQWRFYDDIHVRDYRF
PSLDEIRREEQAVEEKEKEIDKLEDAKDIAVDTCTAVKDDKDKREKLEDAQSDPLPMNLPPPPVAAPMDLPAKIGKKKVQKTYRSVAQSKSGVDEWKDTD
MEDFYKRKPPSSSVPKPAPSQTTARRKGKRNIHRQEIGQSIVEEEKTVEEIKYVYLPPPSPAPPPPPPPPEKKKRSKDFLISLRRKKKKKQRQNSVENLA
SLFDPESEFPAPSSIPPSSPLPPPPPPPPPPHFFQNLFPPKRGKSKKIHSVSVAPPPPPPPPRPSSEVYLSKSVRRPSGSRIQSERPLASAYRPPKPVKT
SSFGSVEDNAESGASPLIPIPPPPPPPPFKMPAWKFEVRGDYVRVASFNSSRSGSPDLDSEDPSDRESSPMAAAAVASPLFCPSPDVNTKADNFIARFKA
GLKLEKVNSGKGKSNLGPSEGPN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72790 hydroxyproline-rich glycoprote... Lus10008464
[exp]
0 1
AT1G21070 Nucleotide-sugar transporter f... Lus10036606
[exp]
1.4 0.9032
AT1G21070 Nucleotide-sugar transporter f... Lus10035824
[exp]
3.5 0.8805
AT2G40130 Double Clp-N motif-containing ... Lus10040206
[exp]
4.0 0.8891
AT3G56590 hydroxyproline-rich glycoprote... Lus10001613
[exp]
5.3 0.8681
AT5G44070 ATPCS1, ARA8, C... CADMIUM SENSITIVE 1, ARABIDOPS... Lus10003622
[exp]
5.9 0.8751
AT4G22120 ERD (early-responsive to dehyd... Lus10015551
[exp]
6.9 0.8757
AT1G07220 Arabidopsis thaliana protein o... Lus10040665
[exp]
7.9 0.8637
AT2G16430 ATPAP10, PAP10 purple acid phosphatase 10 (.1... Lus10041959
[exp]
8.4 0.8628
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Lus10021856
[exp]
10.7 0.8506
AT1G28240 Protein of unknown function (D... Lus10011175
[exp]
10.8 0.8590

Lus10008464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.