Plant FIBer expression Database

Lus10008465 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04865 49 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G17930 49 / 3e-07 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G48120 46 / 2e-06 hydrolases;protein serine/threonine phosphatases (.1)
AT2G25010 45 / 5e-06 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009805
[exp]
146 / 3e-44 AT2G25010 54 / 6e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10032799
[exp]
124 / 1e-37 AT2G04865 64 / 6e-13 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10008144
[exp]
95 / 2e-25 AT1G17930 54 / 4e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10002099
[exp]
83 / 9e-21 ND 39 / 7e-04
Lus10023395
[exp]
77 / 4e-18 AT1G17930 52 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10033882
[exp]
77 / 6e-17 AT5G45380 790 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10033258
[exp]
68 / 2e-15 AT1G17930 56 / 3e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10027047
[exp]
57 / 3e-10 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10020970
[exp]
53 / 7e-09 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10008465 pacid=23155028 polypeptide=Lus10008465 locus=Lus10008465.g ID=Lus10008465.BGIv1.0 annot-version=v1.0
ATGAGAACGATTTTGAGGCCACAATACTATACAAAGGGTGGGATGCATGTGGGCAGAGTCCTGTCAGCAGCGACGGGTGAGCTCCCTGATGCCGACACCG
CCAATTTCTACTTGTTCAGTTTGCTTGCGTCTACACTGTTTGTGGACCGCAGTAGGAGCCTCGGTTGTGTTAGCATCCTGGAGGGTATTAGTGACATTGA
CAGGGTGAGCAGTTACAACTGGGGAGCCGCTGCACTTGCCTTTATGTACAGGCAGCTAGAGATAGCTAGTCGGGTATCCTCGACGTCACTGTGTGTCGGA
CTTTGTTGTAGTCTTCGATCTATGAGTATTTCCCGTGTCTGCGCGGTTCACAGTTCTCGTACCGGCGCAGGACCGATGAGGCACTTGCTGGGAGGTGGGA
CCCACCGAGAGCTATTAAAGAAAAAATAG
AA sequence
>Lus10008465 pacid=23155028 polypeptide=Lus10008465 locus=Lus10008465.g ID=Lus10008465.BGIv1.0 annot-version=v1.0
MRTILRPQYYTKGGMHVGRVLSAATGELPDADTANFYLFSLLASTLFVDRSRSLGCVSILEGISDIDRVSSYNWGAAALAFMYRQLEIASRVSSTSLCVG
LCCSLRSMSISRVCAVHSSRTGAGPMRHLLGGGTHRELLKKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04865 Aminotransferase-like, plant m... Lus10008465
[exp]
0 1

Lus10008465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.