Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16760 447 / 6e-147 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 443 / 8e-146 protein kinase family protein (.1) AT5G12000 443 / 9e-146 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 439 / 2e-144 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT2G24370 426 / 3e-138 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 414 / 1e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G72760 413 / 3e-134 Protein kinase superfamily protein (.1) AT4G31230 411 / 6e-133 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 405 / 2e-130 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006021 [exp] 1107 / 0 AT5G12000 619 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 439 / 1e-146 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 436 / 1e-145 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 437 / 4e-145 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 436 / 4e-145 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 441 / 5e-144 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 439 / 8e-143 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 437 / 2e-142 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 434 / 2e-141 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198300 [exp] 485 / 2e-160 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 468 / 7e-155 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 465 / 9e-154 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 450 / 2e-148 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 442 / 6e-145 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 436 / 5e-142 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 420 / 1e-135 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 395 / 2e-126 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G147000 [exp] 310 / 1e-94 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 311 / 5e-94 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10008466 pacid=23155021 polypeptide=Lus10008466 locus=Lus10008466.g ID=Lus10008466.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGGCGGCTATGTTAGATCAAAATCAAATATCGATGTTGAAAATGCGGGAACAACAGCCATTGCAGTTGATATGGGGAAGAACAGCAATT TTGCTGTCAAATGGACTGCTGAAAATCTCTTGAAAAGGGGATCCTCTTCCTCTTGCATTCTTCTCCATGTTCATAACAAGCCCGCACCTTGTCAGAATCC GAATGCACCAAACCAGAAGGAATTTCAGCAACTTTTCCTTCCTTTCCGAGGATACTTTGCTAGAAAAGGGATTGAAGCACAAGAAGTTGTTCTGTTTGAT ACAGATATAGCAAAAGCTGTCCTAGAGTATATTGCCAAGAACTCCATCACCAATATTGTAACCGGTGCTACCAATAAGAGCGCCTTCTCCAGGAAGTTTT GGAGCGTGAGTCTATCTACCTCATTAATCCATGCTGCACCAGAGTCCTGCTCAGTTTATGTAATTTCCAAAGGTAGAGTTCAAACCATGAGATTGGCTAA TCAGCCACCAACAACCTCTAAATCCTCCATCCCCGCCGCTACATCAAGAACAACTACCGAGCAATCTCATCTCCCTCCTCCTCCTCCTAGTTTGGAGTCC ATTTCTGAGTACAGTTACAGCCAGGGAAGCCTCAACAGTGATTTTTCTTCTATTCAAAGCAGTGGTTCTTCGTCAATATCAACATCCAGTAGTATAAGTA GATTACCAACATCTTATGGGAAAGGGATTCCTTCGCATCCTCATGGCAAGCCTACTAGGTTCATCAACAAGGGACCAGTTTTTGATGGTCATCATGATAC ATGCAATGGTGATTCCATGTCTGATTTCAGCGAGTCCTCATCCTCCTTATCATCAGGAGTTCCACGGAGTTTCCAGTCTGTTGATGCGTCGTGCGATAAT ATGGAAGTCTCTGCCGCATCAGCAAGTTCTGTCAGCTCAACCAGCTCATCAGACAGCATGCAATCAATGGAAGCAGAAATCAAGAGATTGAGGCTTGAGC TTAAACAAACTCTGGATGCGTACAATATGATTTGCAAGGATGCCAATGTGGTTAATGAGATGAAAATGAATCTCCAAAATTCCAATATCCATCAATCCAA AGAGCAGGAGGAGGATTTGAAGGTGGAGTTAGAGCCTGAAACTTCAACACCAGATATGGAGTTACACAGGAGCAAAGCTGCGAGAATAACAGAAATGTTA TCAGAAATGGAAGCTCAAAAGAAACAAAACGCAGAAATGAAAGCCAAGTGTGGTGGTGCAAAAGAGAGGAGCTGCAACAATAGTAAGTCAATGGAATCAC TTTCATATTACAACACCATGGGTAACCAAAACCTTCCCTTCAAGAAATACAACATTCAAGATATAGAAACATCAACAAACTACTTCTCACTATCCCAAAA GATTGGCGAAGGCGGCTATGGGCCTGTTTATGTAGGAGTTATCGATGATATCTCAGTGGCCGTTAAGGTTGTAAGACCAGACTTGTCACAAGGTCAAAAG CAATTCCAGAAAGAGATTGAGGTACTGAGCACGATGAGGCATCCTCATATGGTTACACTCCTTGGCGCATGTCCTCAGTACGGGTGCTTGGTGTATGAAT ACATGGACAATGGGAGCTTAGAAGATAGGCTATTCAGGAAAGACAACACTCCGCCAATCCCATGGAGTACAAGATTTAAGATAGCTACAGAGATCGCCAT AGGGCTCCTCTTCCTCCATGAGTCCAAACCGGAGCCCATCGTCCATCGAGACTTGAAACCTGCAAACATTCTCTTGGATGGGAATTTCGTCAGCAAGATT AGTGATGTTGGATTGGCAAGGCTAGTCCCTGCGGAAGCAAACAATGTCACGAGATACCACATGACGGCGGCTGCTGGGACATTCTGTTACATAGACCCAG AGTATCAACAAACGGGATTGTTGTCGGTGAAGTCGGATTTGTTCTCGTTAGGAGTGGTGTTGTTGCAGCTCATTACAGCGAAAACCCCAATGGGTTTGTC GTACCAGGTGGAGGAAGCTATCGAGAATGGAAGGTTCGCAGCTATGTTAGACCCATCAGTGAAAGACTGGCCTGTGGAGCAGGCAATGTCGATAGCAAAG CTGGCGTTGCAGTGTTGTGAACTGAGGAAGAAGGACAGGCCTAGTCTGGCTAACATTGTGCTTCCAGAGCTCAAGAGGTTGAGAGATTTGGTAAATGGAT GTGATGGTGATCATGGGGAGGAGATATGA
AA sequence Show only first row Show all	>Lus10008466 pacid=23155021 polypeptide=Lus10008466 locus=Lus10008466.g ID=Lus10008466.BGIv1.0 annot-version=v1.0 MAAAGGYVRSKSNIDVENAGTTAIAVDMGKNSNFAVKWTAENLLKRGSSSSCILLHVHNKPAPCQNPNAPNQKEFQQLFLPFRGYFARKGIEAQEVVLFD TDIAKAVLEYIAKNSITNIVTGATNKSAFSRKFWSVSLSTSLIHAAPESCSVYVISKGRVQTMRLANQPPTTSKSSIPAATSRTTTEQSHLPPPPPSLES ISEYSYSQGSLNSDFSSIQSSGSSSISTSSSISRLPTSYGKGIPSHPHGKPTRFINKGPVFDGHHDTCNGDSMSDFSESSSSLSSGVPRSFQSVDASCDN MEVSAASASSVSSTSSSDSMQSMEAEIKRLRLELKQTLDAYNMICKDANVVNEMKMNLQNSNIHQSKEQEEDLKVELEPETSTPDMELHRSKAARITEML SEMEAQKKQNAEMKAKCGGAKERSCNNSKSMESLSYYNTMGNQNLPFKKYNIQDIETSTNYFSLSQKIGEGGYGPVYVGVIDDISVAVKVVRPDLSQGQK QFQKEIEVLSTMRHPHMVTLLGACPQYGCLVYEYMDNGSLEDRLFRKDNTPPIPWSTRFKIATEIAIGLLFLHESKPEPIVHRDLKPANILLDGNFVSKI SDVGLARLVPAEANNVTRYHMTAAAGTFCYIDPEYQQTGLLSVKSDLFSLGVVLLQLITAKTPMGLSYQVEEAIENGRFAAMLDPSVKDWPVEQAMSIAK LALQCCELRKKDRPSLANIVLPELKRLRDLVNGCDGDHGEEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12000			Protein kinase protein with ad...		Lus10008466 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	2.4	0.8933
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	3.0	0.7822
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	8.1	0.8387
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	9.1	0.8434
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	13.9	0.7486
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	18.0	0.8130
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	19.1	0.8068
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	23.6	0.7928
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	31.1	0.7805
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	31.4	0.7901

Compare expression of checked genes

Lus10008466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.