Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17530 191 / 4e-62 ATTIM23-1 translocase of inner mitochondrial membrane 23 (.1) AT1G72750 189 / 2e-61 ATTIM23-2 translocase inner membrane subunit 23-2 (.1) AT3G04800 124 / 4e-36 ATTIM23-3 translocase inner membrane subunit 23-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006020 [exp] 280 / 3e-97 AT1G17530 248 / 1e-84 translocase of inner mitochondrial membrane 23 (.1) Lus10009183 [exp] 140 / 2e-42 AT1G17530 198 / 4e-65 translocase of inner mitochondrial membrane 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198100 [exp] 213 / 7e-71 AT1G17530 154 / 6e-48 translocase of inner mitochondrial membrane 23 (.1) Potri.003G044100 [exp] 213 / 1e-70 AT1G17530 179 / 9e-58 translocase of inner mitochondrial membrane 23 (.1) Potri.013G039200 [exp] 141 / 8e-43 AT3G04800 190 / 5e-62 translocase inner membrane subunit 23-3 (.1) Potri.005G051800 [exp] 138 / 2e-41 AT3G04800 187 / 4e-61 translocase inner membrane subunit 23-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10008470 pacid=23155027 polypeptide=Lus10008470 locus=Lus10008470.g ID=Lus10008470.BGIv1.0 annot-version=v1.0 ATGTCTTTCTCCCACCCCGATCACAATCACGATCCCGACTCTTCTCGCCGCCAATCTGAACACACCCGGCTATACAACCCTTACCAGGACCTAAACACCC CAATCAAAACCCTATACAATATCCCAACCTCGCCAGAGTACCTCTTCTCCGAGGAATCCGTCAAGCAGCGCCGTTCCTGGGGTGAGAATCTCACCTTCTA CACCGGAACCGCGTACCTGGGCGCATCTGTCGGCGGAGGCGCCGTTGGGCTTTTCTCAGCTGTTAAGTCGTTCGAGGCCAACGACACGTTGAAGCTAAAG GTGAACAGGGTTCTGAACAGCTCGGGTCACTCAGGTCGGGTTTGGGGGAACCGGATCGGGATCGTTGGGTTGATCTACGCGATGACGGAGAGTGGGATTG TGACGGCTACTGATAAGGATGATGTTTGGACAAGTGTGGCGGCTGGGCTTGGGACAGGCGCTGTTTGCAGAGCGGCTAGAGGGGTGAGGTCTGCTGCGGT GGCCGGTGCTTTGGGGGGTCTTGCTGCGGGAGCTGTGGTGGCCGGGAAACAGGCGATGAAGAGGTATGCCATGATTTGA
AA sequence Show only first row Show all	>Lus10008470 pacid=23155027 polypeptide=Lus10008470 locus=Lus10008470.g ID=Lus10008470.BGIv1.0 annot-version=v1.0 MSFSHPDHNHDPDSSRRQSEHTRLYNPYQDLNTPIKTLYNIPTSPEYLFSEESVKQRRSWGENLTFYTGTAYLGASVGGGAVGLFSAVKSFEANDTLKLK VNRVLNSSGHSGRVWGNRIGIVGLIYAMTESGIVTATDKDDVWTSVAAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQAMKRYAMI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	0	1
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	1.4	0.9551
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	2.0	0.9506
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023662 [exp]	2.8	0.9271
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	4.7	0.9130
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	5.3	0.9344
AT2G25670			unknown protein		Lus10017738 [exp]	7.1	0.9337
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	7.3	0.9270
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	7.7	0.9357
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	8.4	0.9193
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	8.8	0.9194

Compare expression of checked genes

Lus10008470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.