Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19460 90 / 2e-24 Protein of unknown function (DUF3511) (.1) AT5G11970 87 / 2e-23 Protein of unknown function (DUF3511) (.1) AT1G72720 61 / 8e-13 Protein of unknown function (DUF3511) (.1) AT3G05725 59 / 2e-12 Protein of unknown function (DUF3511) (.1) AT3G13910 58 / 5e-12 Protein of unknown function (DUF3511) (.1) AT2G47480 57 / 2e-11 Protein of unknown function (DUF3511) (.1) AT3G62640 55 / 7e-11 Protein of unknown function (DUF3511) (.1) AT4G09890 50 / 5e-09 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006019 [exp] 187 / 7e-63 AT2G19460 88 / 9e-24 Protein of unknown function (DUF3511) (.1) Lus10027629 [exp] 90 / 2e-24 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10011939 [exp] 90 / 2e-24 AT2G19460 109 / 6e-32 Protein of unknown function (DUF3511) (.1) Lus10017155 [exp] 82 / 5e-21 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1) Lus10021581 [exp] 78 / 1e-19 AT5G11970 97 / 4e-27 Protein of unknown function (DUF3511) (.1) Lus10031405 [exp] 56 / 5e-11 AT3G05725 71 / 6e-17 Protein of unknown function (DUF3511) (.1) Lus10010929 [exp] 54 / 2e-10 AT3G05725 71 / 3e-17 Protein of unknown function (DUF3511) (.1) Lus10033529 [exp] 52 / 1e-09 AT4G09890 70 / 2e-17 Protein of unknown function (DUF3511) (.1) Lus10020842 [exp] 49 / 2e-08 AT4G09890 69 / 2e-16 Protein of unknown function (DUF3511) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197700 [exp] 115 / 1e-34 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 107 / 2e-31 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.006G147700 [exp] 84 / 5e-22 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.006G225900 [exp] 80 / 2e-20 AT5G11970 90 / 2e-24 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 62 / 2e-13 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 57 / 9e-12 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 54 / 9e-11 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.010G140800 [exp] 50 / 2e-09 AT2G47480 62 / 2e-14 Protein of unknown function (DUF3511) (.1) Potri.007G077500 [exp] 50 / 3e-09 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 49 / 8e-09 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [flax] [poplar] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Lus10008471 pacid=23155025 polypeptide=Lus10008471 locus=Lus10008471.g ID=Lus10008471.BGIv1.0 annot-version=v1.0 ATGGAGAACTATAGATCTAAATCATGCAGAGATGGGAGGATGCCCGCGGAGTTCGGGTACGGGCAGCAAGCAGCAGCAGCACCACCGGGAAACATGCAAG GATTAAGGTCTTTTAGTGTGAGCTGTGGGGCACGACAGCCCCCTGAAGAGAAGGGGAAGGCTCATGTTGAGGTTGTTGGTTCAAAAAGCTGGGGGCTAAA TTTGGATCCAGAGCTCCAGAGGAAGAAAAGGGTTGTTAGTTACAAAGCTTACTCGATGGAAGGGAAGATGAAAGGGTCGTTTCGGAAGAGCTTCAGGTGG ATCAAGGATACCTGCAACCAAGTTGTGTATGGATGGAAGTAG
AA sequence Show only first row Show all	>Lus10008471 pacid=23155025 polypeptide=Lus10008471 locus=Lus10008471.g ID=Lus10008471.BGIv1.0 annot-version=v1.0 MENYRSKSCRDGRMPAEFGYGQQAAAAPPGNMQGLRSFSVSCGARQPPEEKGKAHVEVVGSKSWGLNLDPELQRKKRVVSYKAYSMEGKMKGSFRKSFRW IKDTCNQVVYGWK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19460			Protein of unknown function (D...		Lus10008471 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	2.2	0.9577
					Lus10002465 [exp]	6.0	0.9481
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	10.2	0.9331
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	11.2	0.9463
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	12.1	0.9442
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	12.2	0.9460
					Lus10042766 [exp]	12.2	0.9045
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	12.4	0.9455
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	14.4	0.9374
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10024941 [exp]	15.0	0.9327

Compare expression of checked genes

Lus10008471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.