Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57015 117 / 1e-30 CKL12 casein kinase I-like 12 (.1) AT4G26100 106 / 2e-26 CKL1, CK1 casein kinase 1 (.1) AT3G23340 70 / 1e-13 CKL10 casein kinase I-like 10 (.1) AT1G04440 70 / 1e-13 CKL13 casein kinase like 13 (.1) AT5G43320 68 / 6e-13 CKL8 casein kinase I-like 8 (.1) AT4G28880 67 / 8e-13 CKL3 casein kinase I-like 3 (.1) AT1G03930 67 / 9e-13 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G28540 67 / 1e-12 CKL6, PAPK1 casein kinase I-like 6 (.1) AT5G44100 66 / 3e-12 CKL7 casein kinase I-like 7 (.1) AT4G08800 62 / 3e-11 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006018 [exp] 295 / 9e-99 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006879 [exp] 217 / 2e-68 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10037621 [exp] 216 / 6e-68 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 130 / 3e-35 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10011940 [exp] 129 / 2e-34 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10011812 [exp] 71 / 8e-14 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10021175 [exp] 70 / 2e-13 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10043233 [exp] 69 / 3e-13 AT4G28880 614 / 0.0 casein kinase I-like 3 (.1) Lus10042570 [exp] 69 / 3e-13 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197600 [exp] 152 / 3e-43 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 140 / 5e-39 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 130 / 4e-35 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 120 / 1e-31 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.008G168100 [exp] 68 / 5e-13 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.018G041000 [exp] 68 / 7e-13 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1) Potri.010G070400 [exp] 68 / 7e-13 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.006G239900 [exp] 67 / 1e-12 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1) Potri.013G047200 [exp] 67 / 2e-12 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G084500 [exp] 64 / 1e-11 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008472 pacid=23155024 polypeptide=Lus10008472 locus=Lus10008472.g ID=Lus10008472.BGIv1.0 annot-version=v1.0 ATGAGAAGATCAGTGAAAAGGTGTCAACTTCTATTGAGGCTTTATGTCGAGGTTATCCGACTGAATTTTCGTCCTATTTTCATTATTGCCAGTCATTGCG GTTCGATGACAAGCCAGATTATGCAATACCTGAAAAGGCTATTCCGTGATCTGTTCATTCGTGAAGGTTTTCAGTTTGACTATGTTTTTGACTGGACGAT TTTGAAATATCAGCAGTCACAGATATCTAATCCTCCAACTCGTCCTATTGTAAGTTACAGTAACATCTTCGTACCATGTGCTGGATGCAGTGCTGGAATT CCACCTGCTGGTGCAAATGCTGATAGACAGCACGGTGAGAGTGGAGAAGAAAGTAAGCCTGTAAATGATCCCAGGAGAACTTCTGGACCTATCCTAAGTT CTGCAACATTGTCCAAGCTAAAGCGTCCCATTGTTGTTAATGATGCAAAAGATGCTGCGCCGTTACCACCAGGGTCAAACTTTTTGCGAACTGGTCAGGA CTCTACGCAAGCTATGCCTTCAGAGCAGAGGCATTCATCCACCGCTAGAAACAACAACTCGAACACCAAGAACCTGGAATCAACTCTTCGAGGCATCGAA AGCCTTCGGTTCAATATTGATGAGAGACTACTGCAACAGCCAAAAAACGCCACTGTAAAGATGACATCTTTGCCGTCCTTTTACTCATCCAGTAGCCTCG GGGGGTTCAGCCCGCTAATAGATATCATGGTTGTTGTATAG
AA sequence Show only first row Show all	>Lus10008472 pacid=23155024 polypeptide=Lus10008472 locus=Lus10008472.g ID=Lus10008472.BGIv1.0 annot-version=v1.0 MRRSVKRCQLLLRLYVEVIRLNFRPIFIIASHCGSMTSQIMQYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQISNPPTRPIVSYSNIFVPCAGCSAGI PPAGANADRQHGESGEESKPVNDPRRTSGPILSSATLSKLKRPIVVNDAKDAAPLPPGSNFLRTGQDSTQAMPSEQRHSSTARNNNSNTKNLESTLRGIE SLRFNIDERLLQQPKNATVKMTSLPSFYSSSSLGGFSPLIDIMVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57015		CKL12	casein kinase I-like 12 (.1)		Lus10008472 [exp]	0	1
AT3G04560			unknown protein		Lus10035363 [exp]	1.0	0.8869
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10022243 [exp]	2.2	0.6584
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	3.5	0.7309
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	17.1	0.7111
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	22.4	0.6578
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	26.2	0.6624
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	32.2	0.6545
					Lus10005396 [exp]	34.5	0.6497
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10003650 [exp]	36.6	0.6497
					Lus10003840 [exp]	38.6	0.6497

Compare expression of checked genes

Lus10008472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.