Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17500 1903 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1877 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1862 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1843 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1371 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1367 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 1358 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1357 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 1336 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G59820 974 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006017 [exp] 2394 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 2311 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 2310 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1387 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1358 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1351 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1261 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1160 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 973 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197500 [exp] 2051 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 2035 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1483 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1390 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1372 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1357 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1303 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 972 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 954 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 695 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10008473 pacid=23155026 polypeptide=Lus10008473 locus=Lus10008473.g ID=Lus10008473.BGIv1.0 annot-version=v1.0 ATGGGGCGGGGTAGGATAAGGTCTAAGCTACGGCGGAGTCAACTTCACCCATTTTCATGTTTAAGGCCAAAAACGAAAGAGGAGCGGGAGCCACATTCAC TGGAAGGCCCTGGATTCTCTAGAATTGTTCATTGCAATGAACCTGTAAACCACAGGAGAAAACCCTTGAAATACTGTTCAAATTATATCTCAACCACCAA GTACAATGTTCTTACCTTCTTGCCCAAGGCACTGTTTGAACAGTTTCGACGGGTTGCCAATATCTACTTTCTTTTGGCAGCAATCCTTTCCCTAACCCCG GTTGCTCCATTCTCAGCAGTGAGCATGATTTTCCCTTTGGCTTTTGTTGTGGGTATTAGTATGGCAAAGGAAGCTTTGGAAGATTGGGGAAGGTTTATGC AAGACATGAAGGTTAATAGCCGGAAAACCTATGTTCACCAAGGGGATGGTAATTTTAGTTGCAAGACTTGGGAAAAGATACAAGTTGGTGATGTGATTAA GGTAGAGAAGGATCAGTTTTTTCCTGCTGATTTGCTTCTTTTGTCTACAAGTTATGAAGATGGGATTTGCTATGTTGAGACTATGAACCTTGATGGGGAA ACAAACTTGAAGATAAAGCGAGCTCTGGAGGTTACCTTACCTCTAGATGATGATGACACTTTCAAGAGCTTTTTAGGAATGATTAAATGTGAAGATCCAA ATCCAAGCCTGTACACCTTTGTTGGTAATTTCGAGTATGATCGTCAGGTTTATCCTCTTGACCCGAGTCAAGTTCTCCTTAGGGATTCAAAGCTTAGGAA TACAGCTTTTATTTATGGGGTTGTGTTATTCACTGGTTTTGATAGCAAAGTCATGCAGAATTCAACAAAATCACCTTCCAAAAGGAGCAGAGTGGAAAGA AAAATGGACAAGATTATATATATCCTCTTCAGCTTCCTTGTGTTGATTTCATTGATGAGCTCAATTGGTTTTGCTGTCAAGATTAAGTTCCAAATGCCAG ACTGGTGGTATATGCAACCTTTGAAGCCTGAAGAATTGTATGATCCTAGCAGTCCTTCCAAGTCTGGGTTGGCTCATCTGATCACAGCTCTAATCCTTTA TGGATATTTAATTCCCATCTCTTTGTATGTTTCCATTGAGGTCGTGAAAGTTTGTCAAGCAATGTTCATCGACCAAGATATACATATGTACGATGAAGAA ACTGGTAATACTGCTAAAGCAAGGACATCAAATTTGAATGAAGAGTTGGGACAGGTTGACACCATCCTTTCCGACAAAACTGGTACCTTAACATGCAATC AGATGGACTTTTTGAAGTGTTCGATTGCTGGTCATCCATACGGCGTACGCTCTAGTGAGGTTGAACTTGCTGCAGCAAAACAGATGGCTATTGACCTTGA GGATCAGGATGATGGAATTTCAACTAGTTCCCGGGGAAATACTGGTACCAGAAGTTCGTGGGAAAGGTCAGGAGATCCAGAGATTGAACTAGAGACTGTC ATTACTGCTAGAGACGAGAAAGAATATAAACATCCAATTAAAGGGTTTAGCTTTGAGGATAGCCGACTTATGGATGGGAACTGGGTGAATGAGCCTAATC CTGATGTCCTTATGCTGTTTTTCCGGATATTGGCAATTTGTCATACGGCTGTTATATTGGCAATGTGTCATACGGCTGTTCCTGAACTTAATGAAGAGAC TGGAGTATTTACATATGAAGCAGAGTCCCCGGATGAAGGAGCTTTCCTTGTTGCAGCTAGAGAATTTGGTTTTGAGTTCTTCAAAAGAACTCAATCCAGT GTCTCTGTTCGTGAGATAATGCCTCCAGGAAAAGTGGTTGAAAGAGAGTATAAACTTCTAAATCTGTTGGAATTCACAAGCAAGAGGAAGCGGATGTCGG TAATTGTGCAGGATGAGGATAGGCAGATTTTAGTCATGAGCAAAGGTGCTGACAGCATCATTTTTGATCGGCTGTCAAAGAACGGAAGAACATACGAGGA AGCCACTACGAAGCATTTGAACGATTATGGAGAAGCTGGATTACGTACATTGGTACTTGCTTATAAAAAGCTTGACGAGACGGAGTATAATGCCTGGAAC AACGAATTTGTCAAAGCAAAAACATCGATTGGTGCTGACAGGGAAGTGATGCTTGAGAGAATAGCAGACATGATGGAAAAGGACTTTATTCTTGTCGGTG CTACCGCTGTGGAGGATAAGTTGCAACAAGGGGTGCCGCAATGCATAGATAAACTTGCACAGGCTGGTCTAAAGCTATGGGTTTTGACAGGAGATAAGAT GGAAACTGCAATCAACATTGGATACTCTTGTAGTTTGCTTCGGCAAGGCATGAAACAAATCGTTATATCAGCATTGAATTCAGAGAACTTAGCCCAAGAC TCAAAGCAGGCTGCGAAGGACAATATATTGAACCAACTTACCAATGCCTCCCAAATGATCAAGCTGGAAAAAGACCCACATGCTGCGTTTGCACTAATTA TTGATGGGAAGACACTAACCTACACTTTGGAGGATGACATGAAGTACCAGTTCTTGGCTTTAGCAGTTGGCTGTGCATCTGTGATATGTTGTCGCGTCTC TCCCAAACAGAAGGCATTGGTTACCCGGTTGGTAAAAGAAGGCACCGGAAGAACAACTTTGGCAATAGGCGACGGGGCAAATGACGTTGGAATGATTCAA GAAGCTGACATTGGTGTTGGTATCAGTGGGGTGGAAGGCATGCAAGCTGTGATGGCAAGTGATTTCTCAATTTCGCAATTCCGGTTCTTGGAAAGACTTC TTGTTGTCCATGGACACTGGTGCTACAAGAGAATAGCTCAGATGATCTGCTATTTCTTCTACAAGAACATTGCATTTGGTCTCACGCTCTTCTACTTTGA GGCATTCACTGCCTTCTCCGGGCAATCTATTTATGATGATTGGTACATGCTTCTGTTCAATGTCCTCCTTACCTCATTGCCAGTTATTTCACTTGGAGTT TTTGAACAAGATGTTCCATCAGAAGTCTGCTTACAGTTCCCAGCATTATATCAGCAAGGGCCGAAGAACTTGTTCTTTGACTGGTACAGGATACTTGGAT GGATAGGGAATGGTCTATACTCCTCACTCGCCATTTACTTCCTCAACATACTAATCTTGTCTAACCAAGCATTCCGAGTTGGAGGCCAGACAGCAGACAT GGCTGCAGTAGGCACAACAATGTTCTCGTGCATCATCTGCTCGGTAAATTGCCAGATTGCGCTAACAATGAGCCACTTCACATGGATCCAACACGTCTTG GTGTGGGGAAGCATTGGGACATGGTTCTTGTTCCTGTTTGTGTATGGGATGGTATCTCCAACCTACTCAGGAAATGCCTACCAAATCCTGGTGGAAGCTC TTGGTCCGGCACCCATCTACTGGCTCGCAATCCTCTTGGTAACAGTCACTTGTAACCTTCCTTATCTAGCTCACATTTCATTCCAGAGATGTTTCAATCC AATGGACCACCACATCATACAAGAGATCAAGTACTATAGGAAGGATGTAGAGGATCAACATATGTGGAGAAGGGAAAGATCCAAGGCTAGGCAAGAAACA AAGATTGGATTTTCAGCTAGAGTTGATGCAAAGATCAGGTTATTGAGAGGTAGACTGCAAAAGAAGAACACTTTAGCACTGCACAGTAATAGGCCGTCAC AGTCTTAA
AA sequence Show only first row Show all	>Lus10008473 pacid=23155026 polypeptide=Lus10008473 locus=Lus10008473.g ID=Lus10008473.BGIv1.0 annot-version=v1.0 MGRGRIRSKLRRSQLHPFSCLRPKTKEEREPHSLEGPGFSRIVHCNEPVNHRRKPLKYCSNYISTTKYNVLTFLPKALFEQFRRVANIYFLLAAILSLTP VAPFSAVSMIFPLAFVVGISMAKEALEDWGRFMQDMKVNSRKTYVHQGDGNFSCKTWEKIQVGDVIKVEKDQFFPADLLLLSTSYEDGICYVETMNLDGE TNLKIKRALEVTLPLDDDDTFKSFLGMIKCEDPNPSLYTFVGNFEYDRQVYPLDPSQVLLRDSKLRNTAFIYGVVLFTGFDSKVMQNSTKSPSKRSRVER KMDKIIYILFSFLVLISLMSSIGFAVKIKFQMPDWWYMQPLKPEELYDPSSPSKSGLAHLITALILYGYLIPISLYVSIEVVKVCQAMFIDQDIHMYDEE TGNTAKARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGHPYGVRSSEVELAAAKQMAIDLEDQDDGISTSSRGNTGTRSSWERSGDPEIELETV ITARDEKEYKHPIKGFSFEDSRLMDGNWVNEPNPDVLMLFFRILAICHTAVILAMCHTAVPELNEETGVFTYEAESPDEGAFLVAAREFGFEFFKRTQSS VSVREIMPPGKVVEREYKLLNLLEFTSKRKRMSVIVQDEDRQILVMSKGADSIIFDRLSKNGRTYEEATTKHLNDYGEAGLRTLVLAYKKLDETEYNAWN NEFVKAKTSIGADREVMLERIADMMEKDFILVGATAVEDKLQQGVPQCIDKLAQAGLKLWVLTGDKMETAINIGYSCSLLRQGMKQIVISALNSENLAQD SKQAAKDNILNQLTNASQMIKLEKDPHAAFALIIDGKTLTYTLEDDMKYQFLALAVGCASVICCRVSPKQKALVTRLVKEGTGRTTLAIGDGANDVGMIQ EADIGVGISGVEGMQAVMASDFSISQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTAFSGQSIYDDWYMLLFNVLLTSLPVISLGV FEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWIGNGLYSSLAIYFLNILILSNQAFRVGGQTADMAAVGTTMFSCIICSVNCQIALTMSHFTWIQHVL VWGSIGTWFLFLFVYGMVSPTYSGNAYQILVEALGPAPIYWLAILLVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYRKDVEDQHMWRRERSKARQET KIGFSARVDAKIRLLRGRLQKKNTLALHSNRPSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17500			ATPase E1-E2 type family prote...		Lus10008473 [exp]	0	1
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	5.7	0.8531
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	12.7	0.8499
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	13.6	0.8495
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	16.1	0.8296
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	16.1	0.8357
AT2G14255			Ankyrin repeat family protein ...		Lus10000132 [exp]	21.7	0.7476
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	24.0	0.7629
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	24.9	0.8341
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	30.0	0.8224
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	30.6	0.8242

Compare expression of checked genes

Lus10008473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.