Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12800 167 / 4e-44 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000288 [exp] 755 / 0 AT1G12800 478 / 5e-157 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124200 [exp] 142 / 8e-36 AT1G12800 726 / 0.0 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008475 pacid=23177412 polypeptide=Lus10008475 locus=Lus10008475.g ID=Lus10008475.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTAGCGCTCACCGCCGTCGCCGTAGCAGCAACTACTTCATCAACTGCTGCTTGTTCTTCTTTCACCGGCATTCAATTCTCCTTACCTCTTC CGCAATCCCGGTTCAGTAGGTCCTCAAGAAGACGGAGAAGAGAGCTCGCTTTCCCGAGGAAGAGTAGGCTCGTGGTTTCCGCGGCTTCAAATGGACCGAA GCTTGACGAGTGGGACCAAATGGAGCTCAAACTTGGCCGCTACATAGGTGAAGACCCCAAACTCACCCTCGCCAAGATAAAGGCTAAGAAGCTGTATCCG GATGCTTCGTATTTAGAAGTTGAGAAGGAGTTCCGTAGGAACAAAGGGAAGATGGAGGAGATAGAGGAGCTTCCTTTTGATGTCTCTAGTAGAAGGACGC AGAAGCCACCAAGTCCGTCATCTTCAGATGGTTTGAATTTGAATCGACCTGTGTTAAAACAAGGAATGAAGTTCCAAGAGGTGGTTAGGAAACCTGGAAA GGTACCAGTGATGAAGAAACCGGGTCTTCCCGTTATTGGTGATAGCAGGAGTAGTAGTGTCACTGTCAAGCGTAGTGTTCCTGATGTTATCTTGAGGAAA CCAACTGTGTTTGGTGTAGATGATGATGATAAGGAAGATGAAGGTTTGAAGTCTGGAGTGAAGATGATTGAGCCTAGTTTGATGATGAAGATGAGGAGTG AGCGCCAGAACGTGAGGGTAACTGATATGACACTATTGAGAAAGCCTGAGACCGTCAGTGTTGAGAAGAAGCAAGAGACTCCTGCCAATTTGGATGGTCC AGTTAATGATCCAGCGCTCTTGAGAAAACCAGAGACTATGAGTGTTGAGAAGAAGCAAGAGTCTCCTGCCAATGTGGATGGTAGATTGGTAATAGGGAAT GAAGTGAAGCTGCAGAGTGTGAACATGGAGAAGAAGCAAAAGTCTTCTACCAATGTGGATGGCGAAGTGAATGATATGACACTTCTGAAAAAGCCGGAGA ATATGCTTGTTGAGAAGCAGCAAGAATCCCCTACCTTTGTGGATGGAACAGTTAACGGAGGTGATGGATTGGTAATGGGAGATGAAGTGAAGCCGGAGAC AATGAGTGTTGAGAAGAAGCAAGAGTCTTCTGCCAATATGGACAGTAAATTTAATGGTGGTGATGTATCGGCGATGGGGAATGAAGTAAAGGATAGCTTC GTTGGTTTTACTCTGAATCAGAAGCCTGTGAGCGCGAAAAATGAGCTTCAAGAGGTTTCAGATACTGGAAGTGCGCCACTTGGAAAAGAAGATGAAGTTG AACACAAACCTACTCAGGAGAAAAGCATTATTCAGTCTAATGTGGAAGATGATTCAGTCTCCAAGTTGTCTATGGAAACATCACTGCAGGGAAAACCAAA GAGATTAGACCAACCAGTGAAAGAAAGACCGATGTCTAGTGTTGACCAAACAGTTGTTTCGGATTCTGGAAGCAGTACAAACGGCGATGAGTTCCAGACT CTCCGAAATACTTCACATATAGAGGCTGTTGACTGGTCCAGGGCTGAGGACATACTCAAGTCAGGGGATAGAATTCATGTACAGCTATTAAGCTCTAGAA CACACGGATTCATTGTGAGTGCAATGTAG
AA sequence Show only first row Show all	>Lus10008475 pacid=23177412 polypeptide=Lus10008475 locus=Lus10008475.g ID=Lus10008475.BGIv1.0 annot-version=v1.0 MEALALTAVAVAATTSSTAACSSFTGIQFSLPLPQSRFSRSSRRRRRELAFPRKSRLVVSAASNGPKLDEWDQMELKLGRYIGEDPKLTLAKIKAKKLYP DASYLEVEKEFRRNKGKMEEIEELPFDVSSRRTQKPPSPSSSDGLNLNRPVLKQGMKFQEVVRKPGKVPVMKKPGLPVIGDSRSSSVTVKRSVPDVILRK PTVFGVDDDDKEDEGLKSGVKMIEPSLMMKMRSERQNVRVTDMTLLRKPETVSVEKKQETPANLDGPVNDPALLRKPETMSVEKKQESPANVDGRLVIGN EVKLQSVNMEKKQKSSTNVDGEVNDMTLLKKPENMLVEKQQESPTFVDGTVNGGDGLVMGDEVKPETMSVEKKQESSANMDSKFNGGDVSAMGNEVKDSF VGFTLNQKPVSAKNELQEVSDTGSAPLGKEDEVEHKPTQEKSIIQSNVEDDSVSKLSMETSLQGKPKRLDQPVKERPMSSVDQTVVSDSGSSTNGDEFQT LRNTSHIEAVDWSRAEDILKSGDRIHVQLLSSRTHGFIVSAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	0	1
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	1.4	0.9538
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	2.8	0.9467
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	3.0	0.9311
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	3.5	0.9428
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	4.5	0.9406
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	5.7	0.9313
AT1G06900			Insulinase (Peptidase family M...		Lus10008604 [exp]	6.1	0.9033
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	7.1	0.9295
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	7.3	0.9331
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	7.5	0.9408

Compare expression of checked genes

Lus10008475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.