Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61230 279 / 3e-96 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1) AT2G45800 259 / 2e-88 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT1G01780 257 / 1e-87 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT2G39900 240 / 6e-81 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT3G55770 236 / 2e-79 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT1G10200 191 / 1e-61 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000287 [exp] 431 / 3e-156 AT3G61230 271 / 5e-93 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10029859 [exp] 355 / 2e-126 AT3G61230 268 / 9e-92 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10020687 [exp] 355 / 3e-126 AT3G61230 259 / 2e-88 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10014781 [exp] 263 / 5e-90 AT1G01780 313 / 5e-110 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Lus10028257 [exp] 242 / 1e-81 AT3G55770 296 / 2e-103 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10040233 [exp] 249 / 1e-79 AT2G39910 386 / 6e-129 ARM repeat superfamily protein (.1) Lus10004230 [exp] 204 / 5e-67 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 204 / 5e-67 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10043462 [exp] 204 / 7e-67 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124300 [exp] 278 / 8e-96 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 271 / 3e-93 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.014G080900 [exp] 271 / 3e-93 AT1G01780 307 / 2e-107 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.002G157300 [exp] 269 / 3e-92 AT1G01780 308 / 8e-108 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.010G193800 [exp] 241 / 9e-82 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 232 / 6e-78 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.015G072400 [exp] 207 / 4e-68 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 201 / 1e-65 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 199 / 4e-65 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.002G118000 [exp] 197 / 3e-64 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10008476 pacid=23177352 polypeptide=Lus10008476 locus=Lus10008476.g ID=Lus10008476.BGIv1.0 annot-version=v1.0 ATGGTGTTTAGCGGAACCACCGATAAATGCAAGGCTTGCGACAAGACCGTGCATTTCATCGACATGATCACAGCCGATGCAGTCCCTTATCACAAGACTT GCTTCAAGTGCAGCCATTGCCATGGCAAGCTTGTGATGGGGAACTACTCATCAATGGATGGAGTTTTGTACTGCAAGACTCATTTTGAGCAATTGTTCAA GGAAACAGGAAGTTTCTCTAAGAATTTCCAAACTTCTGGAGAAAAGAAGAACACTCAGGGAGCTACACCAAATAAGCTTGCTTCCTTGTTCTCCGGCACC CAAGACAAATGTGCCACTTGCCAAAAAACTGTCTACCCACTCGAAAAGATAACGATGGAAGGAGAGTTCTACCACAAGACATGCTTCAGGTGTGCACACG GAGGGTGCGTACTAACCCACTCCTCCTACGCCGCGCTCAATGGGGTCCTCTACTGCAAGCATCACTTCGCACAACTCTTCAGGGAGAAAGGTTCCTACAG CTACATCAACAAGAAGAGTGCTGCGAATGCCGTGGAAGGATTGAAGGACAGCGAGGAAGACCACAACAACGACGACGAGAAGTCCGCCACCCCAAGGGCG CCTCCGACAGAAGGCGAGGAGGAGCCTGTTGCTCAGGAGCAGTAA
AA sequence Show only first row Show all	>Lus10008476 pacid=23177352 polypeptide=Lus10008476 locus=Lus10008476.g ID=Lus10008476.BGIv1.0 annot-version=v1.0 MVFSGTTDKCKACDKTVHFIDMITADAVPYHKTCFKCSHCHGKLVMGNYSSMDGVLYCKTHFEQLFKETGSFSKNFQTSGEKKNTQGATPNKLASLFSGT QDKCATCQKTVYPLEKITMEGEFYHKTCFRCAHGGCVLTHSSYAALNGVLYCKHHFAQLFREKGSYSYINKKSAANAVEGLKDSEEDHNNDDEKSATPRA PPTEGEEEPVAQEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10008476 [exp]	0	1

Compare expression of checked genes

Lus10008476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.