Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 117 / 2e-32 Remorin family protein (.1.2) AT3G48940 106 / 1e-28 Remorin family protein (.1) AT3G61260 97 / 2e-24 Remorin family protein (.1) AT2G45820 84 / 9e-20 Remorin family protein (.1) AT1G63295 74 / 1e-16 Remorin family protein (.1) AT4G00670 50 / 4e-08 Remorin family protein (.1) AT3G57540 49 / 9e-07 Remorin family protein (.1) AT2G02170 48 / 2e-06 Remorin family protein (.1.2) AT1G67590 46 / 8e-06 Remorin family protein (.1.2) AT2G41870 44 / 3e-05 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001477 [exp] 249 / 8e-84 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008014 [exp] 154 / 1e-47 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10027460 [exp] 112 / 1e-30 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10039215 [exp] 111 / 3e-30 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10014785 [exp] 101 / 2e-26 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10018840 [exp] 100 / 7e-26 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10024514 [exp] 95 / 2e-24 AT5G23750 113 / 5e-32 Remorin family protein (.1.2) Lus10017811 [exp] 94 / 2e-23 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10030379 [exp] 82 / 3e-19 AT3G61260 178 / 4e-57 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124400 [exp] 117 / 1e-32 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.015G143600 [exp] 107 / 1e-28 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.014G081300 [exp] 104 / 2e-27 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 101 / 2e-26 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.001G107000 [exp] 96 / 4e-24 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.012G140800 [exp] 91 / 2e-22 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.008G178300 [exp] 51 / 2e-07 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.016G054400 [exp] 45 / 1e-05 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.012G140900 [exp] 44 / 1e-05 AT3G48940 78 / 6e-19 Remorin family protein (.1) Potri.006G053200 [exp] 45 / 2e-05 AT3G57540 196 / 2e-61 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10008477 pacid=23177413 polypeptide=Lus10008477 locus=Lus10008477.g ID=Lus10008477.BGIv1.0 annot-version=v1.0 ATGGGAGAAGAAGAACTGAAAGTTAGTGCAGCAGCTCAGACATCACTGGAGGGAGAAGCTTCCCCTGTTTCCCCTGCTGCTGCTGTTTCTGGGAATCACA TGGTTCCTGTTGTTGATGATGATCATCAGAATGGCTCTGCAGATGCAGAGGAAGAAGCTGGTCATGATCAGAAAGTTGGTTCTTCTCCAAGCAAGAAGAG TGCATCCCCTGTATCTGAAACTGAAAGTATGCTTCTTCCTCCCGATTCTCATAACACCAGTTGGTTTTGGCGAGAAAATGAAGCAGCAGTTGCAGAAAAG ACGACAGAGAAAACTCCACTCAACCCAGTTCGCAGAGATGCTGCGCTTGCAAGGGTTCAAGCCGACAAAAGGAATGCTCTGATCTCTGCATGGGAGGAAA ATGAGAAGGCAAAAATCGACAAGAAGACTTACAAAAGGCTGTCCGCGATCGAGTCGTGGGAGAACACCAAGAAAGCAGTCGTGGAAGTACAGCTAAAGGA GTTTGAGGAGCAACTGCAGAGGAAGAGGGCTGAGTATGGAGAGAAGGTGCAGAACAAGCTAGCGGAGATCCACAAGGAAGCAGAGGAGAAGAAGGCAGTG GTTGAAGCAAATAAAGGTGAAGAGTATGTGAAGATTGAGGAAACTGCAAATAGGTACAGAACCACTGGGAATACACCAAGGAAGTTCTTCAGTTGCTTAG GTTGTTAA
AA sequence Show only first row Show all	>Lus10008477 pacid=23177413 polypeptide=Lus10008477 locus=Lus10008477.g ID=Lus10008477.BGIv1.0 annot-version=v1.0 MGEEELKVSAAAQTSLEGEASPVSPAAAVSGNHMVPVVDDDHQNGSADAEEEAGHDQKVGSSPSKKSASPVSETESMLLPPDSHNTSWFWRENEAAVAEK TTEKTPLNPVRRDAALARVQADKRNALISAWEENEKAKIDKKTYKRLSAIESWENTKKAVVEVQLKEFEEQLQRKRAEYGEKVQNKLAEIHKEAEEKKAV VEANKGEEYVKIEETANRYRTTGNTPRKFFSCLGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23750			Remorin family protein (.1.2)		Lus10008477 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	2.2	0.9164
AT2G20080			unknown protein		Lus10012982 [exp]	8.6	0.8997
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	19.2	0.8790
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10011630 [exp]	26.8	0.8730
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	27.1	0.8539
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	27.6	0.8709
AT1G73210			Protein of unknown function (D...		Lus10018267 [exp]	29.2	0.7834
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	29.2	0.8463
AT1G09490			NAD(P)-binding Rossmann-fold s...		Lus10026153 [exp]	36.2	0.8602
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	38.5	0.8347

Compare expression of checked genes

Lus10008477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.