Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53270 237 / 7e-77 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001478 [exp] 498 / 3e-178 AT3G53270 294 / 5e-99 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Lus10032295 [exp] 207 / 6e-63 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10024665 [exp] 130 / 1e-36 AT3G53270 87 / 3e-21 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065800 [exp] 266 / 1e-87 AT3G53270 292 / 5e-99 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Potri.004G126720 [exp] 154 / 2e-46 AT3G53270 174 / 3e-55 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Potri.004G126760 [exp] 118 / 1e-32 AT3G53270 157 / 2e-48 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09808 [flax] [poplar] SNAPc_SNAP43 Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Representative CDS sequence Show only first row Show all	>Lus10008478 pacid=23177403 polypeptide=Lus10008478 locus=Lus10008478.g ID=Lus10008478.BGIv1.0 annot-version=v1.0 ATGGATGTGTTCATTCCCGAAGAGTATGTAGTGCGGAGGAGGGCCGAGAAGAGGGCGGCTGCGGCCGCGAAGTCTCAATCGAGTACTAATGACTTGGAGG ATCGGAAGCTGACTGAGAAGAAGGGGAGCCGTGGAATGCTGGTGGCAGCACATCATAGTAATAGTAATGGTAGCGTTCTGCCTGAAAATGAACAATCAAC AAAATTTTCTGACCTGAAGAAGATATGGCAGTCAAGGAAGTTCTCTTACATTTACGATGCCAGACCTGTTGCAAATTTCGCCTTCTTTATGCAGTCACTA TACGCCCATACAATTGGCCATATGTTCGACACGGCTTCTTTATCGAGAGGTTTAGGGGGATTGTATTGCTTGTACTGCCTTTATGAGACTCAGCCATTTA AGCCTCCTTTCAAGGTTTATATCTCCCTTGAGGAACTGGCAAAATTTAAGAGCCTTGTTGCCGAAGCAAAAATGAACGAGGTAAAAGAAGCAGCTGTGAT AGTGAAAAGAATGCTGGAAAAGGATGCATTTCTCTATGGGTTTGTTGATATAGGCGAAGCTGCGAAAACCGTGGATAAACTCACGGAATTGCAGAATGCT CGAGTGAAGTTTGCTTCAAAGAAGTTATTGGAGGGTACGGGAGTTGAGCAGTTCCTCCACTTGGACATGGCAAAAGAGTTGGATGTAGACAAGTTGAAGA AAGCATCCGCAGAATATGCAGAGTTTAAGAAACGTGCAATCGGAGAGGCCAGCAAGGTAGTGAATGTTGAAGATGTTGAGCATCTTGCGAATGATGATGA ACTGATCGGTGACGAAGCAGAGAAAATCGCTGAGTGTTGGCAAGTGCAGAAGGATTTGTACTACAAAACAACAGGGTTGGAATCCCCTCGGGCACAGCCT CCTCGCCAACAAGACGATGATGACGACGACAACGACGAATTTGGTCGTGAGCTGGAAACGGAGCTACAGTTGTACGACGAGGATTTCGAATAG
AA sequence Show only first row Show all	>Lus10008478 pacid=23177403 polypeptide=Lus10008478 locus=Lus10008478.g ID=Lus10008478.BGIv1.0 annot-version=v1.0 MDVFIPEEYVVRRRAEKRAAAAAKSQSSTNDLEDRKLTEKKGSRGMLVAAHHSNSNGSVLPENEQSTKFSDLKKIWQSRKFSYIYDARPVANFAFFMQSL YAHTIGHMFDTASLSRGLGGLYCLYCLYETQPFKPPFKVYISLEELAKFKSLVAEAKMNEVKEAAVIVKRMLEKDAFLYGFVDIGEAAKTVDKLTELQNA RVKFASKKLLEGTGVEQFLHLDMAKELDVDKLKKASAEYAEFKKRAIGEASKVVNVEDVEHLANDDELIGDEAEKIAECWQVQKDLYYKTTGLESPRAQP PRQQDDDDDDNDEFGRELETELQLYDEDFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	0	1
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	1.0	0.9547
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10012737 [exp]	1.4	0.9388
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	8.0	0.9100
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	10.8	0.8879
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	12.0	0.8867
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	14.4	0.8768
AT1G17100			SOUL heme-binding family prote...		Lus10013045 [exp]	14.8	0.9118
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	16.0	0.8497
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	16.1	0.8666
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	19.4	0.8254

Compare expression of checked genes

Lus10008478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.