Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 378 / 2e-133 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 375 / 1e-131 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 297 / 7e-102 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001479 [exp] 530 / 0 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 399 / 2e-141 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 395 / 7e-140 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 327 / 1e-113 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 286 / 1e-97 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10037652 [exp] 274 / 8e-93 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10032691 [exp] 62 / 2e-10 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 407 / 1e-144 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.003G034600 [exp] 393 / 4e-139 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.018G054800 [exp] 309 / 6e-106 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Lus10008479 pacid=23177408 polypeptide=Lus10008479 locus=Lus10008479.g ID=Lus10008479.BGIv1.0 annot-version=v1.0 ATGGCGGGAATCGTGGTGGTATTCGACTTCGATAAAACAATCGTCGACGTTGACAGCGACAACTGGGTGATTGACGAACTGGGTTTCACCGATTTGTTCA ACCGCCTACTTCCTACCATGCCTTGGAACTCCCTCATGGATAGAATGATGAAGGAGATTTATGAGCAGGGGAAAACTATTGACGACATAGTTGGAGTTCT GAACCGCATTCCAATTCACCCGAGGGTTGTCCCTGCCATCAAATCTGCTCATGCTTTAGGGTGTGAGTTGAGGATTGTGAGCGATGCAAACTTGTTCTTC ATCGAGACGATATTGGAGCACCATGGATTGAGGAGTTATTTCTCTGGAATTAATACCAACCCAGGATTTGTTGATGAACTAGGAAGGCTCAGGATTTCTC CTCACCATGATTTCGTCGTTTCCCCACATGGTTGCACCCTCTGTCCTCCGAACATGTGCAAGGGATTGGTCATGGAAAAGATGCAAGCTTCGCTGGCAAA AGAAGAAGTGGAATGCACAAGAATGATATATCTAGGAGATGGAGCAGGGGATTACTGTCCAAGCTTGAAGCTGACAGAAACTGACTATGTGATGCCAAGG AAGAACTTCCCAGTCTGGGATCTCATAAGCAAGAACCCGATGGTGATCAAGGCTCAGATTCATGAATGGAGCGACGGAGAAGAGCTCGAGCGTGTTCTGC TCGACATTGTCGCTACCGTTACAGCCCACCACGAGTTGCTAGCTGTTGCTGCTGCTAATAACAGCAGTAACGGAGACTGCAAGTTCCGTACAATCGCTCT CGTTCCTGCTGCTCCGTTCCCTCGCCATATCGCAGTTCCTCAGCAGTAG
AA sequence Show only first row Show all	>Lus10008479 pacid=23177408 polypeptide=Lus10008479 locus=Lus10008479.g ID=Lus10008479.BGIv1.0 annot-version=v1.0 MAGIVVVFDFDKTIVDVDSDNWVIDELGFTDLFNRLLPTMPWNSLMDRMMKEIYEQGKTIDDIVGVLNRIPIHPRVVPAIKSAHALGCELRIVSDANLFF IETILEHHGLRSYFSGINTNPGFVDELGRLRISPHHDFVVSPHGCTLCPPNMCKGLVMEKMQASLAKEEVECTRMIYLGDGAGDYCPSLKLTETDYVMPR KNFPVWDLISKNPMVIKAQIHEWSDGEELERVLLDIVATVTAHHELLAVAAANNSSNGDCKFRTIALVPAAPFPRHIAVPQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	0	1
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	6.5	0.7770
AT5G20790			unknown protein		Lus10007378 [exp]	6.5	0.7925
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	7.2	0.8071
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	8.9	0.7490
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10024107 [exp]	10.7	0.8185
AT1G62420			Protein of unknown function (D...		Lus10035594 [exp]	12.2	0.7774
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	27.5	0.7630
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041647 [exp]	29.7	0.6993
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	30.8	0.7602
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	32.7	0.7523

Compare expression of checked genes

Lus10008479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.