Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03070 695 / 0 IMPA-9 importin alpha isoform 9 (.1) AT3G06720 194 / 2e-55 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G09270 190 / 5e-54 IMPA-4 importin alpha isoform 4 (.1.2.3) AT4G16143 187 / 5e-53 IMPA-2 importin alpha isoform 2 (.1.2) AT1G02690 183 / 3e-51 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 182 / 5e-51 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT3G05720 169 / 2e-46 IMPA-7 importin alpha isoform 7 (.1) AT5G49310 167 / 1e-45 IMPA-5 importin alpha isoform 5 (.1) AT5G52000 123 / 2e-30 IMPA-8 importin alpha isoform 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001480 [exp] 912 / 0 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10010933 [exp] 197 / 9e-57 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 197 / 1e-56 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 191 / 3e-54 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 190 / 3e-54 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10037722 [exp] 188 / 3e-53 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 186 / 1e-52 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036330 [exp] 183 / 2e-51 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10041124 [exp] 178 / 4e-50 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086600 [exp] 737 / 0 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.008G214100 [exp] 197 / 2e-56 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.005G020400 [exp] 196 / 4e-56 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G010900 [exp] 196 / 4e-56 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 194 / 1e-55 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G007300 [exp] 189 / 1e-53 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.002G199600 [exp] 187 / 1e-52 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 183 / 2e-51 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10008480 pacid=23177357 polypeptide=Lus10008480 locus=Lus10008480.g ID=Lus10008480.BGIv1.0 annot-version=v1.0 ATGGCGGAAGACGGATTGGCTTCTCTTAAGCGAGACCCGATCAAGTCATCACTTAGTACTGCAGCTACGCAGAAGAGGCGGCAAAATGCAGTTGCAGTTA GTAAAGAACGAAGAGAGTCCCTGGTCAGAGCCAAGCGCATGTGCAGGGCTGGGCCAAGTAGTGATGATGATCTGGACAGCGAGATGATGGTTGATGAAGA AGAGGAATCAATTTTGAATTCTCAAGCTTCTGCAGCTGTGGAAGAGTTGAAGTCTGCTGTTGCTTTTCAAGGTAAAGGAGCGATGCAGAAGGTAGTTACT GCGCTTCGAGAGCTAAGGCGCATTCTGTCTCGGTCCGAATTCCCTCCGATCGAGGCTGCTCTTGAAGCCGGTGCAATACCCCCACTCGTCCACTGTCTAG CTTTTGGTTCACCGGACGAACAATTGCTCGAGTCCGCTTGGTGCCTGACAAACATCGCTGCTGGCAAACCAGACGAAACAAAGGCGTTGGTGCCTGCATT GCCGTTGCTTATTGCACATCTCGGAGAAAAGAGTCCGTCCCCTGTCGCTGAGCAGTGTGCGTGGGCATTGGGAAACGTGGCCGGGGAAGGAGCGGAGTTA CGCAACGTCTTGTTAGCGCAAGGAGCCTTACTACCTCTTGCAAGAATGCTGCTTCCTAGCAAAGGCTCGACCGTACGTACAGCAGCTTGGGCGCTATCGA ACCTGATTAAAGGACCCGAACCTATGGCTGCGAAGAAACTGATCGAAGTCGACGGAGTACTAGAGGCCATTACTCGCCACTTGAGGAAGGCCGACGATGA GCTGGCAACTGAGGTGGCATGGGTAGTTGTATACCTCTCGGCACTGTCGAATCGCGCAACTTCCATGCTGGTGAAATCCAACGTCCACGACTTGCTCTTG GAAAGACTAGCGACGTCGAGTAGTTTGCAGTTGCTGATTCCGGTTTTAAGGAGTCTTGGAAACCTTGTAGCAGGCGATTCTCAAACCACTTTCACGGGTA ATATTATCGGCGTGCTGACTAAATATCTGAAGAGCGAGCATCGAGTTTTAAAGAAGGAAGCTGCTTGGATGCTGTCAAACGTTGCAGCCGGTTCAGTGGA ACACAAGCAATTGATACACTCGAGCGAGGCTGTGCCGTTGTTACTGAGCCTTCTTTCAACTGCAACGTTTGATGTACGGAAGGAAGTAGCGTATGTTTTG GGTAACCTCTGTGTGGCAGCAACCACCGAAAGCAGCGGGAAGCCGAGTGTCATTGTCGACCACTTGGTTTCCCTCGTCAGGAAAGGGTGTCTCCGTGGCT TTGTGAACTTGGTTCGCTCTGCCGATACTGAGGCGGGGAAGCTGGGGCTTCAATTCATGGAGCTGGTTTTAAGAGGGATGCCGAATGGGGAAGGGCCAAA GCTTGTGGAGAGAGAGGATGGGATCGAAGCCATGGAGAGGTTTCAGTTTCATGAGAATGAAGACTTGAGGAACATGGCGAATGGTTTGGTTGACAGGTAC TTTGGGGAGGACTACGGTGTCGAGCAATAG
AA sequence Show only first row Show all	>Lus10008480 pacid=23177357 polypeptide=Lus10008480 locus=Lus10008480.g ID=Lus10008480.BGIv1.0 annot-version=v1.0 MAEDGLASLKRDPIKSSLSTAATQKRRQNAVAVSKERRESLVRAKRMCRAGPSSDDDLDSEMMVDEEEESILNSQASAAVEELKSAVAFQGKGAMQKVVT ALRELRRILSRSEFPPIEAALEAGAIPPLVHCLAFGSPDEQLLESAWCLTNIAAGKPDETKALVPALPLLIAHLGEKSPSPVAEQCAWALGNVAGEGAEL RNVLLAQGALLPLARMLLPSKGSTVRTAAWALSNLIKGPEPMAAKKLIEVDGVLEAITRHLRKADDELATEVAWVVVYLSALSNRATSMLVKSNVHDLLL ERLATSSSLQLLIPVLRSLGNLVAGDSQTTFTGNIIGVLTKYLKSEHRVLKKEAAWMLSNVAAGSVEHKQLIHSSEAVPLLLSLLSTATFDVRKEVAYVL GNLCVAATTESSGKPSVIVDHLVSLVRKGCLRGFVNLVRSADTEAGKLGLQFMELVLRGMPNGEGPKLVEREDGIEAMERFQFHENEDLRNMANGLVDRY FGEDYGVEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	0	1
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	1.0	0.8766
AT5G07900			Mitochondrial transcription te...		Lus10036450 [exp]	8.0	0.8702
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10007953 [exp]	11.2	0.8267
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	12.0	0.7835
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	12.7	0.8547
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	14.1	0.8004
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017570 [exp]	19.4	0.8260
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	20.1	0.8196
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	20.4	0.8155
					Lus10006608 [exp]	22.7	0.7869

Compare expression of checked genes

Lus10008480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.