Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056000 [exp] 64 / 9e-14 AT5G11760 / unknown protein Potri.006G232200 [exp] 49 / 7e-08 AT5G11760 / unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08576 [flax] [poplar] DUF1764 Eukaryotic protein of unknown function (DUF1764)
Representative CDS sequence Show only first row Show all	>Lus10008481 pacid=23177392 polypeptide=Lus10008481 locus=Lus10008481.g ID=Lus10008481.BGIv1.0 annot-version=v1.0 ATGCCGAAGAAGGGCCGTTCGGGAGCGCCTAAAGAAGCCATTGATGTACAACAAGTAAAGCCAGGAAGTCGTCCATCTGGTACGAAGAAAAAGCCTGTGA ATGAAATCGACCAAATTTTCACTGGAAAGAAGAGGAAAGTCCAAAGCGAAGGAACTAGTGACGGGACGAACCAAAAGAGGAAGCCGGTGAATGAGATTGA CTTGATTTTTGCTGGAAAGAAGAGGAAGAAAAGCCAGAGTGTAGAAAAGAGTAATGTCGCGAACTCGAGTGAATCGAAAAAAGCAAGAACTAGTGACAAG AAGGGAATGAAGAAGAAGAGTATGGGAGATGAAGAGAGGAGATTCGAAGATCTAGCAGGAAGCAGCAGGTCTCGGAGGAAAACTGCAGATGGTCTGACGA TTTACACAGAGGAGGAATTGGGTATGAGTAAATCTGAGGGTGGAGGAGGTACCCCGCTTTGTCCGTTTGATTGCGATTGTTGCTTCTGA
AA sequence Show only first row Show all	>Lus10008481 pacid=23177392 polypeptide=Lus10008481 locus=Lus10008481.g ID=Lus10008481.BGIv1.0 annot-version=v1.0 MPKKGRSGAPKEAIDVQQVKPGSRPSGTKKKPVNEIDQIFTGKKRKVQSEGTSDGTNQKRKPVNEIDLIFAGKKRKKSQSVEKSNVANSSESKKARTSDK KGMKKKSMGDEERRFEDLAGSSRSRRKTADGLTIYTEEELGMSKSEGGGGTPLCPFDCDCCF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11760			unknown protein		Lus10008481 [exp]	0	1
AT2G44820			unknown protein		Lus10036053 [exp]	5.7	0.8877
AT5G49210			unknown protein		Lus10036792 [exp]	7.3	0.8367
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10022882 [exp]	7.6	0.8806
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	19.7	0.8515
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	20.9	0.8749
AT3G53740			Ribosomal protein L36e family ...		Lus10016466 [exp]	22.3	0.8572
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	23.5	0.8148
AT5G62270			unknown protein		Lus10035022 [exp]	24.3	0.8597
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	29.4	0.8295
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	33.2	0.8556

Compare expression of checked genes

Lus10008481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.