Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41140 375 / 8e-113 Myosin heavy chain-related protein (.1.2) AT1G63300 359 / 2e-106 Myosin heavy chain-related protein (.1) AT5G52280 231 / 1e-62 Myosin heavy chain-related protein (.1) AT1G22060 82 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001481 [exp] 1740 / 0 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 676 / 0 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10024517 [exp] 671 / 0 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10001482 [exp] 644 / 0 AT1G63300 298 / 5e-92 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 248 / 2e-68 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 241 / 4e-66 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 234 / 1e-63 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 221 / 3e-59 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 96 / 1e-19 AT1G22060 985 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124600 [exp] 510 / 1e-161 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 392 / 4e-119 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 268 / 5e-75 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 165 / 3e-41 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 92 / 3e-18 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 89 / 1e-17 AT1G22060 1031 / 0.0 unknown protein Potri.006G120400 [exp] 49 / 2e-05 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 47 / 0.0001 AT1G22060 117 / 5e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008482 pacid=23177410 polypeptide=Lus10008482 locus=Lus10008482.g ID=Lus10008482.BGIv1.0 annot-version=v1.0 ATGTTCAGGCCGGTGAGGTGGCGGAGTCATGATAAGAACAAGATCAAAGTCGTCTTCAAATTTCAGTTCCATGCAACTCAGGTTATACAGGTCAATGTGG AATCTTTAATAGTCAGTGTGGTTCCTGGAGAAGTTGGGAAGCCAACTGGTGGAAGATCAGAGAAGGCTACAATCAAAGATGGAAACTGCAAGTGGGAATA TCCAGTCTATGAAACAGTTAAATTCAACCAAGATTCCAAGACTGGGAAGATCAGTGAGAGGACTTATCACTTCATTCTCTCAACTGTTTCGATTCAGAAG TTGCAGGCAAGTGTAGCTGTAGATCAGAGGGAAGAGGAGGAAAATGAAGCTACAAACATAAAGCCGAGAAATACGACGTTGAATACTCTCTTCACCAACG ACGAGAATGGAGAAGGCATCAAGAGTTTTACTAATGGGGATGTGTTGAGTGCTACAAACAATAATGCTGAACCGAATGGAGTAGTCTCTACCGCAATAAG TGGATCTGATGTTACATTGACAAGCTCCGGGAGCAGCTCAGGGCTTAATACACCACGAGACAGCCAACTCGCGAGCAATGGCACCTTACAGGATCATGCT AGCACGCTAGCATCAAAAACTGTAGCGTTGGCCCCTGGAGGACATCAACAACAACAACCACAATACGAATGGTCGGTAGATTCTGATCAGGGCTTGAGCA TCGATGGCTCGACGAACAGTTCCAATACGGGAGAAAGGTCTCAACAAAGTTCGTCGGATGTCGAGGTTGAGAAGCTCAAGGCGGAACTTGTCACGGTGGC AAGGCAGCTAGATCTTTCGGACCTTGAATTGCAGACACTTCGCAAGCAAGTCGTGAAGGAAAGCAAGAGGGGCCACGATCTGTCTCGAGAGCTCAAGCAA ATCCACGTGGAATGCGAGCAACTTAGGGGGATGCAAAAAGGAATGGAGGAAGCAAAAGTGAAAAAAAACAAGTTACAAAAATCTGATCAAGGGGTTGGTG GGGATCCGTGGCTTCTTGTTGGAGAGATCAGACAAGAACTCTATTATGAGAAGGACCGAAATGCCAACCTCCAATTGCAGCTACAGAAGACTCAAGAATC CAATGCAGAGCTGTTACTTGCTCTAAAGGAGCAAGACGAAATGTTGGCGCAGAAGGGTACTACTACAGAGACCACCAATGCATCGAAAAGTGGGAGCTCG GACGATGAGGAGCAGCAAGTGTTTGAAGAAATCGTGAAACAGCACAGAGATACTAAGGAGACGTACATGCTGGAGCAGAGGATTATCGATCTAGGTAGCG AGATCGAGATCTATAGGAGGGAAAAGGACGAGCTGGAGATGCAAATGGAGCAGCTTGCGCTTGATTACGAGATACTTAAGCAGGAGAATCATGACATTTC GTATAGGCTCGAGCAGAGCCAGCTGCAAGAGCAACTCAATATGCAGTATGAATGCTCATCGCCACCGACTGCGAATGGGAGGAACTCGTTGGAGAGCGAG ATTGAGAGGCTGGAAGACGAACTGAAGGAGCAAGGGGTAGAGTATTCTATCTCCTTGGACACTATAAAAGAACTTCAGAACCATATCAAGATGGTCGAGG GAGAGCTGGATTCGGAACGAGAAAGAATGTCGCCGCATCCTGCCGTTGTCGAGGAACTAGAAGGCCGAATCGAGAGTTTGGAGAATGAACTGAGCAAGCA ACGGAAGGCATATTCCGGTTCTGTTGTGACCATTAATGAACTTCGAAACAATATCAAGAGCTTGGAGGGAGAAATAAAGCTGCAAGAACAAAGTGCATTA CAACATGAAGCATCAGCTGCTGCCAACACAAAGGAACTCAAATCCGAAATCGAGAGGTTGCAGAATGAAAAGATTGAATCTTTGGCCACCATAAGTGAAC TTCAATGCCATATCAAGAGCTTAGAGGAAGAAATAAAGACACAAGAGGAGAATATACTGCAGCATGAAGCATCAGCTGCTGCCAACACAAAGGAACTCAA ATCCGAAATCGTGAGGCTGGAGAATGAAGTCAACGAGCAACGAAATGAATACAACGGTTCTTTGGCCATCATAAGTGGACTTCAAAACCATATCAAGACC TTAGAGGAAGAAATGAAGATGCAAGAAGAAAGTATATTGGATCAGGAAGCATCAGCTGCTGCTGACACAAAGGAACTCAAATCCGAAATCGAGAGGTTGC AGAATGAAAAGATTGAATCTTTGGCCACCATAAGTGAACTTCAATGCCATATCAAGAGCTTAGAGGAAGAAATAAAGACACAAGAGGAGAATATACTGCA GCATGAAGCATCAGCTGCTGCCAACACGAAGGAACTCGAATCCGAAATCGAGAGGTTGGAGAAGGAAATAGAGGAGAAACGAAATGAAAAGATTGGATCT TTGGCCACCATAAGTGAACTTCAATGCCATATCAAGAGCTTAGAGGAAGAAATAAAGACACAAGAGGAGAATATACTGCAGCATGAAGCATCAGCTGCTG CCAACACGTTGTCTAAGCAGATGGCATCTACATTCGAAGCGAACGAGAACGTAGCGATGAAGGCAATCGCAGAAGCTAACGAAGTCAGGGTTCAGAAAAT TCAACTTGAAGACATGCTTAGGAGAGCCAAGTCAGAACTCCAGTCTGTTAAGGATGACTATGACAAAAAATTGCTAGAGCTCACCAACCAGTTGGACTTG AAATCTCGTCAAGTTGAGGAACTTCTAGGTGGAACTTCCAATCAGAAGGTTCAGAAGCTGCAAGCTGAAATCGAAAAGCTTGCAAAAGAAAATAACCTGC TCTCCATACAAGTGGAGGAAATGAAGGCCTCCATCAAGAACCATGAAGAACTGGTGAATAGTATTGCTATACTGAAGAAAGAAGCAGAGAAATCGGCAGA GGATCTACGCAAGACAAGATCAATCAAGGATGCAGAAGTGGAGAGACTACAATGTCAATGTGACGACTTGAAACATTCTCTCATTGAAGACGAGACCGAG AAGGAAAAACTCAGAATGCAGTTGGTCTGCTTAAAGGGTGAACTCAAGAAAAAAGATGAAGCTTTGATCAGTGCCGAAAAGAAGGCCAAGGAAAGCAACA GACGTGCACTAATCGCTCCAAGAAACAACAAGTCTGCTGCTGCTCTAGTTTCTAATGGTATCAAAGAGGTCTCAAATCTCAAGGAGAAAATTAAATTGCT TGAGATGCAGATAAGATCAAAGGAAGCTGCTTTGGAGACATCTGCTAGTTCATTTATGCACAAGGAAAGAGATCTTATGGACAAGATTGATGAGCTGGAG GAAAGAGTGGATGAACTTAACCAAAAGCTGAATACAAACAGCATCAACAACGAGAAAGATTTTGATGCCAAAGAGCTGGTGAGGGAACTGGTATCGTTGA AGGAGAGGAATAAAGAGATGGGGAGTGAGCTATTGGAGATGCAAGAGAGGTATTCAGAGATAAGTCTGAAGTTTGCAGAAGTAGAAGGTGAGAGGCAAAA GCTTGTGATGACAGTAAGAAGCTTGAAGAATGCCAGAAAGGACCTCAAACTATGA
AA sequence Show only first row Show all	>Lus10008482 pacid=23177410 polypeptide=Lus10008482 locus=Lus10008482.g ID=Lus10008482.BGIv1.0 annot-version=v1.0 MFRPVRWRSHDKNKIKVVFKFQFHATQVIQVNVESLIVSVVPGEVGKPTGGRSEKATIKDGNCKWEYPVYETVKFNQDSKTGKISERTYHFILSTVSIQK LQASVAVDQREEEENEATNIKPRNTTLNTLFTNDENGEGIKSFTNGDVLSATNNNAEPNGVVSTAISGSDVTLTSSGSSSGLNTPRDSQLASNGTLQDHA STLASKTVALAPGGHQQQQPQYEWSVDSDQGLSIDGSTNSSNTGERSQQSSSDVEVEKLKAELVTVARQLDLSDLELQTLRKQVVKESKRGHDLSRELKQ IHVECEQLRGMQKGMEEAKVKKNKLQKSDQGVGGDPWLLVGEIRQELYYEKDRNANLQLQLQKTQESNAELLLALKEQDEMLAQKGTTTETTNASKSGSS DDEEQQVFEEIVKQHRDTKETYMLEQRIIDLGSEIEIYRREKDELEMQMEQLALDYEILKQENHDISYRLEQSQLQEQLNMQYECSSPPTANGRNSLESE IERLEDELKEQGVEYSISLDTIKELQNHIKMVEGELDSERERMSPHPAVVEELEGRIESLENELSKQRKAYSGSVVTINELRNNIKSLEGEIKLQEQSAL QHEASAAANTKELKSEIERLQNEKIESLATISELQCHIKSLEEEIKTQEENILQHEASAAANTKELKSEIVRLENEVNEQRNEYNGSLAIISGLQNHIKT LEEEMKMQEESILDQEASAAADTKELKSEIERLQNEKIESLATISELQCHIKSLEEEIKTQEENILQHEASAAANTKELESEIERLEKEIEEKRNEKIGS LATISELQCHIKSLEEEIKTQEENILQHEASAAANTLSKQMASTFEANENVAMKAIAEANEVRVQKIQLEDMLRRAKSELQSVKDDYDKKLLELTNQLDL KSRQVEELLGGTSNQKVQKLQAEIEKLAKENNLLSIQVEEMKASIKNHEELVNSIAILKKEAEKSAEDLRKTRSIKDAEVERLQCQCDDLKHSLIEDETE KEKLRMQLVCLKGELKKKDEALISAEKKAKESNRRALIAPRNNKSAAALVSNGIKEVSNLKEKIKLLEMQIRSKEAALETSASSFMHKERDLMDKIDELE ERVDELNQKLNTNSINNEKDFDAKELVRELVSLKERNKEMGSELLEMQERYSEISLKFAEVEGERQKLVMTVRSLKNARKDLKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	0	1
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	2.4	0.9587
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	2.6	0.9651
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	3.5	0.9636
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	4.2	0.9636
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	6.9	0.9620
AT5G42710			unknown protein		Lus10016315 [exp]	6.9	0.9536
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	7.4	0.9597
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	8.5	0.9226
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	8.8	0.9540
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10013979 [exp]	10.1	0.9080

Compare expression of checked genes

Lus10008482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.