Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39680 364 / 2e-121 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 304 / 4e-99 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 288 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G02750 295 / 4e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 291 / 3e-93 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 287 / 4e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 293 / 7e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 293 / 4e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 287 / 2e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 281 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001483 [exp] 559 / 0 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014956 [exp] 287 / 3e-95 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 295 / 4e-95 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 293 / 2e-93 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035788 [exp] 293 / 4e-93 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010998 [exp] 291 / 7e-93 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036921 [exp] 286 / 3e-91 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 276 / 6e-91 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 284 / 2e-90 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084900 [exp] 442 / 4e-152 AT5G39680 782 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 305 / 4e-99 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 295 / 3e-95 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 295 / 8e-94 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 298 / 9e-94 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 292 / 6e-93 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G005400 [exp] 289 / 2e-92 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 282 / 4e-92 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G018700 [exp] 292 / 5e-92 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 287 / 5e-92 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008483 pacid=23177416 polypeptide=Lus10008483 locus=Lus10008483.g ID=Lus10008483.BGIv1.0 annot-version=v1.0 ATGAAGCATCGTAGGATCGTCTCTTGGAATGCGATCATATGCGGATTTTCACACCATGGACTTGGAAAGGAGGCTCTTTTGGTGTTTCAGGACATGATGG CTGCTGAAGAAGTCCGTCCTAACCATGTTACTTTCGTGGGTGTGCTATCTGCCTGCGCTAATTTAGGTTTGGTGGACAAAGGTTTCTACTTTTTTAACTA CTTAATGAAGGAGATGGGCATAGATCCGGAATTAGAGCATCATTCATGTATGGTTGGTCTTCTTAGGAAAGCTGGAAAACTCGAGGAGGCGAAGGATTTT CTGATGTCCAGTATCGAGATATGGGATGTTGTTGCGTTGCGGACTCTGCTAAATGCTTGCCATATTCACAAGAAGTACGATTTAGCCGAGCAGGTTGCGA AATCCATTATTGAGATGGATCCTAGGGACATGGGATCATATACACTGCTGTCGAATGTTTATGCTAGGAGAAGTAGGTGGGATTCAGTTGCGGAGATCCG AAAGCTGATGAAGGATAGAAAAGTGAGAAAGGAGCCCGGTTCGAGCTGGATCGAGATAGGGAACGTGACTCATGTCTTTGTTTCGGACGACAAGAGACAT CCGGAAAGCGGTGAGATTTACGAGAAGGTAAAGGAAATTATTGCACTGATCAAGCCTTGGGGTATTTCCCTGATGTTGAACTTGTGCTTCATGAATGTTG AGGATGAGCAGAAGGAAGATCACCTTTGTTATCACAGTGAGAAGTTGGCTATGGCTTACGGTATCATGAAACTGCCTCCTGGCGTTCCTATCATCGTGAT TAAGAATCTTAGGATGTGTGATGATTGCCACTCAGCTGCCAGACTCATTGCGAAACTGACACGTAGGTCGATAATTATTAGAGATGCCAAAAGGTTCCAC CATTTTCAGGATGGCTGCTGTTCTTGTGGAGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10008483 pacid=23177416 polypeptide=Lus10008483 locus=Lus10008483.g ID=Lus10008483.BGIv1.0 annot-version=v1.0 MKHRRIVSWNAIICGFSHHGLGKEALLVFQDMMAAEEVRPNHVTFVGVLSACANLGLVDKGFYFFNYLMKEMGIDPELEHHSCMVGLLRKAGKLEEAKDF LMSSIEIWDVVALRTLLNACHIHKKYDLAEQVAKSIIEMDPRDMGSYTLLSNVYARRSRWDSVAEIRKLMKDRKVRKEPGSSWIEIGNVTHVFVSDDKRH PESGEIYEKVKEIIALIKPWGISLMLNLCFMNVEDEQKEDHLCYHSEKLAMAYGIMKLPPGVPIIVIKNLRMCDDCHSAARLIAKLTRRSIIIRDAKRFH HFQDGCCSCGDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10008483 [exp]	0	1
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	8.1	0.7775
AT3G22250			UDP-Glycosyltransferase superf...		Lus10035452 [exp]	15.0	0.7326
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	17.5	0.7326
					Lus10006880 [exp]	66.0	0.6232
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	202.2	0.6039

Compare expression of checked genes

Lus10008483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.