Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14260 132 / 3e-38 Protein of unknown function (DUF567) (.1) AT1G63410 125 / 7e-36 Protein of unknown function (DUF567) (.1) AT1G53870 122 / 2e-34 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 122 / 2e-34 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT1G53880 119 / 5e-31 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 119 / 5e-31 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT2G38640 82 / 4e-19 Protein of unknown function (DUF567) (.1) AT5G41590 81 / 1e-18 Protein of unknown function (DUF567) (.1) AT3G15810 68 / 8e-14 Protein of unknown function (DUF567) (.1) AT1G80120 66 / 6e-13 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001484 [exp] 369 / 6e-132 AT3G14260 137 / 5e-40 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 76 / 7e-17 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 71 / 1e-14 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 70 / 2e-14 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 69 / 4e-14 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 69 / 5e-14 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10025253 [exp] 42 / 0.0001 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125300 [exp] 197 / 6e-64 AT3G14260 137 / 3e-40 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 196 / 2e-63 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 148 / 5e-45 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1) Potri.001G106400 [exp] 144 / 3e-43 AT1G63410 178 / 1e-56 Protein of unknown function (DUF567) (.1) Potri.003G125200 [exp] 134 / 2e-39 AT1G63410 164 / 3e-51 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 82 / 7e-19 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 76 / 2e-16 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 72 / 2e-15 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 67 / 1e-13 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 67 / 2e-13 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10008485 pacid=23177372 polypeptide=Lus10008485 locus=Lus10008485.g ID=Lus10008485.BGIv1.0 annot-version=v1.0 ATGTCCAAAATCCATCCCATCTTCCCATCATCCACCGCGGCATCGGCTTTGTGTTCCTCCGATGTTACTACGAGTACCGAAACGTTCACCATGTGGATGA AGTCCCTAGTGATGCAAGGCAACGGATGCACCATTTACGACCAAAACGGCGCAGTCGTCTACCGGGTCGACAACTACCAGAAGAAGGGCGCCAACGAGGT CTACCTCATGGATCTCAAGGGAAATCTCCTCTTCACCATCCTCAAAACGAAATTGTGGCTGTTTAACAAGCAGTGGAAAGGGTACAAGCGGGAGGAAGAG ACGGCGTCGTTTCGAGTGGTGAGGAAAAGGCGCGGCGTTTCGGGGACGGAGTGGTGCTGTAAGATTAGTTTTCGCGACGGGGGTAGTGGTGACGGATTGT GTTGGTACAAGATGGAAGCGTCGTCTTCGGGGAAACTGACAGCGTTTAAGATAACTGACGGAGTTAGTGGAGGGATAGTGGCGGAGGCGAAGAGGAAGCT GCAGTCTGGGGTTGGGTCGACCGGAGTTATGTTGGGAGATGATGTGTTAACGCTAGTGGTTCAACCGGGAGTCAACCGTTGTTTCGTGATGGCTTTAGCG ACGGTCTACGGATTGATGAGTCGTAGATTGTGA
AA sequence Show only first row Show all	>Lus10008485 pacid=23177372 polypeptide=Lus10008485 locus=Lus10008485.g ID=Lus10008485.BGIv1.0 annot-version=v1.0 MSKIHPIFPSSTAASALCSSDVTTSTETFTMWMKSLVMQGNGCTIYDQNGAVVYRVDNYQKKGANEVYLMDLKGNLLFTILKTKLWLFNKQWKGYKREEE TASFRVVRKRRGVSGTEWCCKISFRDGGSGDGLCWYKMEASSSGKLTAFKITDGVSGGIVAEAKRKLQSGVGSTGVMLGDDVLTLVVQPGVNRCFVMALA TVYGLMSRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	0	1
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10013480 [exp]	7.9	0.8413
AT3G22750			Protein kinase superfamily pro...		Lus10006603 [exp]	12.6	0.7895
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10001293 [exp]	14.8	0.8182
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	15.0	0.8310
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	16.9	0.7940
AT4G21865			unknown protein		Lus10014471 [exp]	18.4	0.8306
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Lus10035016 [exp]	23.6	0.8031
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	38.2	0.8153
					Lus10022574 [exp]	43.1	0.7480
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	46.7	0.7484

Compare expression of checked genes

Lus10008485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.