Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63430 843 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 717 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G45840 258 / 2e-76 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 229 / 9e-66 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G58540 206 / 1e-60 Protein kinase superfamily protein (.1.2.3) AT1G75820 204 / 1e-55 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G56050 197 / 1e-55 Protein kinase family protein (.1.2) AT2G40270 190 / 5e-53 Protein kinase family protein (.1.2) AT1G31420 191 / 9e-53 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G01210 192 / 2e-52 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001489 [exp] 1296 / 0 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008310 [exp] 1048 / 0 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 1038 / 0 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 310 / 4e-96 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 301 / 1e-92 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 287 / 2e-87 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 275 / 5e-83 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 241 / 2e-70 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 236 / 1e-68 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124800 [exp] 948 / 0 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 913 / 0 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G067400 [exp] 312 / 2e-96 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.008G072100 [exp] 297 / 1e-91 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 256 / 2e-75 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.004G058100 [exp] 245 / 2e-71 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G280200 [exp] 242 / 2e-70 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 218 / 6e-62 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G105000 [exp] 194 / 8e-54 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G108000 [exp] 193 / 3e-53 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008486 pacid=23177411 polypeptide=Lus10008486 locus=Lus10008486.g ID=Lus10008486.BGIv1.0 annot-version=v1.0 ATGAGATCATACACTTCGTTGCAGCTTCTCTTCTTTGTTGCATCTCTAGCTCCCTTTGTCTCTTCTCAGTCTTTTCCTCAGGATGAAGTTGCGGCGCTGA ATGCTTTCAAGGAAGCAATATATGAAGACCCTCTTCTGGTTTTGTCCAATTGGAATGCTGTAGATGCTAATCCTTGTGAGTGGTCTGGTGTGTATTGCTC TTCTTCTGGAGACCATGTTGTTAAGATAAACATATCTGAATCGTCTCTCCGCGGGTTTATATCTCCGGATTTAAGCAGGATCACAAACTTGCAAGAACTA GTCTTGCATAGGAACAACTTGTTAGGAACCATACCAAAAGAACTAGGCATGCTGAAGCAGCTTAAGAGGCTGGATTTAGGAGCCAATCAATTGACAGGTC CGATTCCTCCCGAGCTGGCGAATATATCTGGCATCATGAAGATAAATTTCCAGTCCAATGGGCTAACTGGGAATCTGCCCTCTGGGTTTGGCGACTTGAA ATACCTTCAGGAACTTGTCCTGGATAGGAACAAACTCCAGGGCTCTTTTCCAGCTAGTAATGCTTTCCCTTCCACCGCGCATGGGATGTACTCAGGTGGA AATTTAACTGGTCTGTGTCAAGCATCTAACTTAAAAGTAGCTGATTTCTCTTTCAACTTCTTCACCGGAACGATACCTAAATGTTTGGAATACCTTCCCA GGGCAAGCTTTCAAGGAAACTGCCTTCAGAACAAAGATCCAAAACAGCGAAGTTCTGCTCAATGTAGCAAGTACCCCGGTCCTCAACCGATGAAAAACCA TGAAACGTCTAACAACATAAGGCACCCAGCTGCTGAAGTAGTTTCTTCCAAGGAGCATCAGAGGAAGTCGAAACCGACGTGGTTATTGGTTTTGGAAATA GTGACGGGAATCATGGTCGCAGCCATCTTTGTTGTTTTCGTTTTCACCGCCTTCCAGAGATGGAACACCAGGGCTGCTATCATAATGCCTTGGAAGAAAT CAAGCAGTCAGAAGGAACCTTTGACTGTATACATAGCAGACACTGATATGCTGAAAGATGTGGCGAAATTCAACAGACAGGAACTGGAAACGGCGTGTGA AGACTTCAGCAACATCATTGGTTCTTCTCCGGATAGTTTGGTGTATAAGGGGATCATGAAAGGAGGTCCTGAGATTGCGGTCATATCTCTTTGTATCAAG GAGGAACTCTGGACTGGCTACCTTGAGCTCTATTTCCAGAGGGAGGTTGCAGATTTGGCAAGATTAAACCATGAGAACACTGGGAAGTTCCTAGGATATT GTAAAGAGAGCAGTCCATTTACCAGAATGCTAGTTTTCGAATATGCATCAAATGGAACCTTGAATGAACACCTTCATTATGGAGAAGAAAACCAATTATC CTGGACACGGCGCATGAGGATTATTACAGGCATGGCACGGGGGCTAAAGTACCTTCACGAGGAACTCGACCCGCCTTTCACAATCTCGGAGTTGCATTCT AGTGCTGTTTACCTAACAGAAGACTTCTCCCCCAAGCTGGTGGATTTCGAGAGCTGGAAGAGCATCGTTTCCAGATCAGAAAAGAATTATGCATCCATTG GAGGCCAAGGTGCTATCTGCCTACTTCCGAATTCAATGGAGGCGCGCCACCTTGACATTAAAGGCAACGTGTATGCTTTCGGTGTACTATTACTCGAAAT CATCAGCGGTAGGCCTCCGTACTGCAAAGACAAAGGGCCCCTGGTAGACTGGGCAAAGGACTTGCTCGAAAACCCGGACGCAATGTGCAATCTGGTGGAT CCTGAGCTGAAGAACTTCAAACTTGAGGACCTGAAAGCTGTATGTGAAGCTGTAACACTATGCATCCATCCAGATGCTACAAAGCGGCCATCGATGAAGG AGTTGTGCACGATGCTGGAAAGCCGAATCGACACATCGGTGTCTTATGACTTCAAGGCATCTTCATTGGCATGGGCTGAGCTTGCATTGTCATCACAATA A
AA sequence Show only first row Show all	>Lus10008486 pacid=23177411 polypeptide=Lus10008486 locus=Lus10008486.g ID=Lus10008486.BGIv1.0 annot-version=v1.0 MRSYTSLQLLFFVASLAPFVSSQSFPQDEVAALNAFKEAIYEDPLLVLSNWNAVDANPCEWSGVYCSSSGDHVVKINISESSLRGFISPDLSRITNLQEL VLHRNNLLGTIPKELGMLKQLKRLDLGANQLTGPIPPELANISGIMKINFQSNGLTGNLPSGFGDLKYLQELVLDRNKLQGSFPASNAFPSTAHGMYSGG NLTGLCQASNLKVADFSFNFFTGTIPKCLEYLPRASFQGNCLQNKDPKQRSSAQCSKYPGPQPMKNHETSNNIRHPAAEVVSSKEHQRKSKPTWLLVLEI VTGIMVAAIFVVFVFTAFQRWNTRAAIIMPWKKSSSQKEPLTVYIADTDMLKDVAKFNRQELETACEDFSNIIGSSPDSLVYKGIMKGGPEIAVISLCIK EELWTGYLELYFQREVADLARLNHENTGKFLGYCKESSPFTRMLVFEYASNGTLNEHLHYGEENQLSWTRRMRIITGMARGLKYLHEELDPPFTISELHS SAVYLTEDFSPKLVDFESWKSIVSRSEKNYASIGGQGAICLLPNSMEARHLDIKGNVYAFGVLLLEIISGRPPYCKDKGPLVDWAKDLLENPDAMCNLVD PELKNFKLEDLKAVCEAVTLCIHPDATKRPSMKELCTMLESRIDTSVSYDFKASSLAWAELALSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	0	1
					Lus10008146 [exp]	1.0	0.7861
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	2.4	0.7805
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	4.9	0.7489
AT2G03630			unknown protein		Lus10036900 [exp]	10.2	0.7750
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	10.8	0.7816
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	11.8	0.7233
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	13.1	0.7762
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	13.7	0.7502
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	16.7	0.7467
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	19.1	0.7393

Compare expression of checked genes

Lus10008486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.