Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41190 650 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001487 [exp] 1111 / 0 AT5G41190 690 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124700 [exp] 707 / 0 AT5G41190 692 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF08772 [flax] [poplar] NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like
Representative CDS sequence Show only first row Show all	>Lus10008488 pacid=23177374 polypeptide=Lus10008488 locus=Lus10008488.g ID=Lus10008488.BGIv1.0 annot-version=v1.0 ATGGAGGACGATAAGCCGACAACGACGACGAATCCATCTCCGCCTCCTCCCGCTGTTGCTGCTCCTCCTCCAATGTGCTGGAGTAACGCCGTGAAGAGCC AGCCTCCGCCGGCGCCGAAGCCCCAGACCCCTACAGTCTCCAGCCAGGTGTTCGTCGAGAGCTGCAAGTCGACGAAGGGTATTGCGGTGGCTGTCATCGA TGCTAATGCAGTGATTCAAGGTGGAGAGAATCTCCACAACCTCGCTGATAAGTTCGTCACCGTTCCTGAAGTTCTCAATGAAATTCGTGACCCTGTTTCC CGCCATCGCCTTACTCTCATCCCTTTCAACATTGATTCGATGGAGCCAACTCCTGAAGCGCTTAATAAAGTGATCAAGTTTGCTAAGGCGACTGGTGACT TGCAGACCCTGTCAGATGTGGATCTTAAACTCATTGCCCTTACGTACTCTTTGGAGGGGCAGATCCATGGCACTCAACATCTTCGAGATGCTCCGCCCCC TGTCCAGACGGTCAATGTGAAGAGGTTGCCCGAGAAGGAAATGCCAGGATGGGGATCTAATGTTCCTAATTTGGAAGAATGGGAGGCACTGGAGCAGGAG TCTGGGGATGGAGTGAACTTGAACTCGAGAATTCTTCCCTTGAAAGATGTGGACTTGAATGCTATTGTAACTGATGACAAATCTGAAGCTGGTAGTGTTA CGACGAAAGGAGATGAAGATTGGTCCGAGAATCAGGAAGATATTGAGGATGGTAGAAGGAAATATAAGAGGTACCCGGTTAAGAAAATAGAGGTGAACAT TGAAGGGAAGAAGATGGTGGTAGCTGGTATTGATGCTTCTCAGGGGAAAATTGACGATGATGGTCATGGTTGGTTGCCTGCTGTTAGCAAGAGTACTCAT AGGAAATATCTTAGAAGGAAAGCCAAGTACGAACACTCTCAAGCTTTGTGCGAGAAAGATTGTCAGCAAGATATGGAGGCACAATTGGCTAGTGATAAGA AGGAAACAAGTAACTCTGACCAGCTTCCGACTCAAGGGTTGGAAGCAAATGCTGCAAATGGAGCCTCCAAACAGGAGGGTGAAGAGGGGAACAATGGAGA TGAAAATCTGACCTCAATCCTGAAACAAATGAGAGTGGAAGAAGAATCATTGAAGACTCTTCCGGAAGGCAATGAAGAGAACAGTGATTCTAATGATGAT ACACAACTTCCAGGAGAAGACATTGATGTCACAAATCCAGAGCTAGATACATTGGAGACTTTGAGTGAAACCAATGAAAGTATTGATACTCGCTGCGAGG ATGACTGTACTAGTGAGCAGAGTTGGATGCTTCGATCTTTGTCAGAGTCGAGTGTTGCTTGTGTAACTGGTGATTTTGCTATGCAGAATGTTCTCCTACA AATTGGTTTACGCCTTGTGGCACCAGGAGGGATGCAAATTCGGGAGCTAAAAAGGTGGATTCTGAAATGCCATGCATGCTACACAGTCACTGCTGAAATT GGCAGGCTCTTCTGTCCCAAATGTGGAAACGGTGGCACACTTCAAAAAGTAGCAGTCACGGTTGGTGAAAATGGCGTAACTTTAGAAGCACGTCGGCCTC GTACCTCATTACGTGGTACAAAGTACTCCGTGCCTATGCCAAAAGGAGGAAGGGACGCCATTACCAAGAACCCAATTCTCCGTGAGGATCAAGTCCCGCA AAAGTTCCTCCGGCCTAAGACAAAGAAGAAAAACAACATACAGGACGATGACTTCTTTGTTTCATCGGGTGACATATTTGGGAAAGTCGATAAAAGGACC GCTTTCAAGCCACCTGTAGGGAAAGCATTTACACTCTATGGTGGTAGGAAGAACCCTAATGACAATCACTATGCCCGCCATAATAATAGTTAA
AA sequence Show only first row Show all	>Lus10008488 pacid=23177374 polypeptide=Lus10008488 locus=Lus10008488.g ID=Lus10008488.BGIv1.0 annot-version=v1.0 MEDDKPTTTTNPSPPPPAVAAPPPMCWSNAVKSQPPPAPKPQTPTVSSQVFVESCKSTKGIAVAVIDANAVIQGGENLHNLADKFVTVPEVLNEIRDPVS RHRLTLIPFNIDSMEPTPEALNKVIKFAKATGDLQTLSDVDLKLIALTYSLEGQIHGTQHLRDAPPPVQTVNVKRLPEKEMPGWGSNVPNLEEWEALEQE SGDGVNLNSRILPLKDVDLNAIVTDDKSEAGSVTTKGDEDWSENQEDIEDGRRKYKRYPVKKIEVNIEGKKMVVAGIDASQGKIDDDGHGWLPAVSKSTH RKYLRRKAKYEHSQALCEKDCQQDMEAQLASDKKETSNSDQLPTQGLEANAANGASKQEGEEGNNGDENLTSILKQMRVEEESLKTLPEGNEENSDSNDD TQLPGEDIDVTNPELDTLETLSETNESIDTRCEDDCTSEQSWMLRSLSESSVACVTGDFAMQNVLLQIGLRLVAPGGMQIRELKRWILKCHACYTVTAEI GRLFCPKCGNGGTLQKVAVTVGENGVTLEARRPRTSLRGTKYSVPMPKGGRDAITKNPILREDQVPQKFLRPKTKKKNNIQDDDFFVSSGDIFGKVDKRT AFKPPVGKAFTLYGGRKNPNDNHYARHNNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41190			unknown protein		Lus10008488 [exp]	0	1
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	3.2	0.8197
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	3.5	0.8186
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10020500 [exp]	6.3	0.8227
AT3G01160			unknown protein		Lus10041866 [exp]	7.7	0.8092
AT4G11630			Ribosomal protein L19 family p...		Lus10041948 [exp]	8.0	0.7821
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Lus10038663 [exp]	9.5	0.8081
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	10.6	0.8208
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	10.7	0.7953
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	12.0	0.8151
AT1G18850			unknown protein		Lus10024247 [exp]	13.4	0.7710

Compare expression of checked genes

Lus10008488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.