Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01750 181 / 1e-59 ADF11 actin depolymerizing factor 11 (.1) AT4G00680 181 / 2e-59 ADF8 actin depolymerizing factor 8 (.1) AT5G59890 177 / 4e-58 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT3G46010 175 / 2e-57 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT4G25590 174 / 8e-57 ADF7 actin depolymerizing factor 7 (.1) AT4G34970 172 / 2e-56 ADF9 actin depolymerizing factor 9 (.1) AT5G52360 172 / 2e-56 ADF10 actin depolymerizing factor 10 (.1) AT2G16700 171 / 1e-55 ADF5, ATADF5 actin depolymerizing factor 5 (.1.2) AT5G59880 169 / 4e-55 ADF3 actin depolymerizing factor 3 (.1.2) AT3G46000 166 / 8e-54 ADF2 actin depolymerizing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024418 [exp] 181 / 9e-60 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10024417 [exp] 178 / 2e-58 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025319 [exp] 178 / 2e-58 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10022933 [exp] 176 / 1e-57 AT2G31200 254 / 9e-89 actin depolymerizing factor 6 (.1) Lus10014977 [exp] 174 / 6e-57 AT4G25590 233 / 1e-80 actin depolymerizing factor 7 (.1) Lus10038859 [exp] 173 / 8e-57 AT4G25590 232 / 2e-80 actin depolymerizing factor 7 (.1) Lus10024885 [exp] 173 / 1e-56 AT2G31200 230 / 3e-79 actin depolymerizing factor 6 (.1) Lus10039229 [exp] 170 / 2e-55 AT5G52360 231 / 6e-80 actin depolymerizing factor 10 (.1) Lus10027474 [exp] 170 / 3e-55 AT5G52360 244 / 6e-85 actin depolymerizing factor 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106200 [exp] 199 / 6e-67 AT4G00680 234 / 6e-81 actin depolymerizing factor 8 (.1) Potri.003G125500 [exp] 194 / 5e-65 AT4G00680 234 / 1e-80 actin depolymerizing factor 8 (.1) Potri.001G236700 [exp] 186 / 7e-62 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 183 / 1e-60 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.009G028200 [exp] 182 / 3e-60 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.009G028100 [exp] 182 / 5e-60 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.008G052100 [exp] 181 / 1e-59 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.010G208500 [exp] 172 / 2e-56 AT5G59890 255 / 4e-89 actin depolymerizing factor 4 (.1.2) Potri.009G133100 [exp] 172 / 3e-56 AT2G16700 257 / 7e-90 actin depolymerizing factor 5 (.1.2) Potri.004G173800 [exp] 171 / 1e-55 AT2G16700 255 / 4e-89 actin depolymerizing factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10008489 pacid=23177398 polypeptide=Lus10008489 locus=Lus10008489.g ID=Lus10008489.BGIv1.0 annot-version=v1.0 ATGTCGGGGAATGCCTCATCTGGTATGGCAGGGAGCGAGGAATGCAAAGAGAGATTCTTGGAGCTCAAGTCCAAGAGGATCCATCGATTCATCGTGTTCA AGATCGAGGAGAAGAAGCAGAAGGTAACAGTGGAGAAGCTAGGCGAGCCTTGCCAAAGCTACAACGATTTCACAGCCAGCTTTCCTGAGAACGAGTGCAG ATATGGCATCTTCGATTTCGATTTCACCACTCCCGACAACCTCAACAAGATCAAAATCTTCTTCATTTCCTGGTCTCCGGATTCGTCAAAGGTGAGGAAC AAGATGCTGTATGCAAGTTCGAAAGACGGGCTCAGAAGGATCCTTGATGGAGTTCAAATTGAGGTCCAAGCTACTGAGCCATGTGAGATGAGCTTGGAGG TTGTTCAAGAAAGAGCCCGTTGGTTGAATCATTGA
AA sequence Show only first row Show all	>Lus10008489 pacid=23177398 polypeptide=Lus10008489 locus=Lus10008489.g ID=Lus10008489.BGIv1.0 annot-version=v1.0 MSGNASSGMAGSEECKERFLELKSKRIHRFIVFKIEEKKQKVTVEKLGEPCQSYNDFTASFPENECRYGIFDFDFTTPDNLNKIKIFFISWSPDSSKVRN KMLYASSKDGLRRILDGVQIEVQATEPCEMSLEVVQERARWLNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	0	1
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	3.0	0.9054
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	3.5	0.9113
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	3.7	0.9236
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	4.7	0.9029
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	5.3	0.9008
AT2G32760			unknown protein		Lus10037826 [exp]	7.5	0.8977
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	8.8	0.9015
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	10.0	0.8936
AT4G27120			unknown protein		Lus10011161 [exp]	10.7	0.9109
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	13.0	0.9084

Compare expression of checked genes

Lus10008489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.