Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11640 463 / 4e-165 ATSR serine racemase (.1) AT3G10050 106 / 3e-25 OMR1 L-O-methylthreonine resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027728 [exp] 128 / 1e-32 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 120 / 8e-30 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10023884 [exp] 107 / 3e-25 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10014390 [exp] 104 / 1e-24 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106000 [exp] 469 / 2e-167 AT4G11640 460 / 9e-164 serine racemase (.1) Potri.006G118400 [exp] 110 / 1e-26 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10008490 pacid=23177378 polypeptide=Lus10008490 locus=Lus10008490.g ID=Lus10008490.BGIv1.0 annot-version=v1.0 ATGGAGACAGAGATCCAGCTTAGCACAGAGAAGTATGCTGCTGATATCTCGTCCATAAGAGAAGCTCATAGTCGTATAAAGCCGTATATTCACAGAACTC CACTCCTTACCTCAGAATCACTCAATGACTTGTGTCGAAGGAAGCTGTACTTCAAGTGTGAGTGTTTACAAAAGGGTGGGGCATTCAAATTTAGAGGTGC TTGCAATGCCATATATTCACTGGATGATGAGCAAGCAGCCAAAGGTGTTGTTACTCATAGCAGTGGTAACCATGCAGCAGCATTGGCATTAGCTGCAAAA CTAAGGGGGATTTCGTCGTACATTGTTATACCGGAAAATGCTCCGGAGTGCAAGGTTGAGAATGTCTTGCGTTATGGAGGTCAGGTTGTACGGTGCGAGA GCACAATGCACGCTCGGGTGGATACTGCTCGTAAGGTCATGGAGGAAACAGGTGCCCTCCTTGTTCATCCTTTTAACGATGGCCGTATCATAAGCGGGCA AGGTACAGTAGCACTGGAGCTTTTGGAGCAAGTACCACATCTGGACACCTTGGTGGTGCCTATAAGTGGAGGTGGTTTGATCTCTGGGGTGGCGTTAGCT GCCAAGTCCATCAACCCTTCTCTCAAGGTTTTCGCCGCAGAGCCTAAGGGAGCTAATGATTCTGCTCTGTCCAAAGCAGCAGGCCAAATCGTGACATTGC CTCAAACTGACACCATTGCTGATGGACTTCGAGCTTTTCTCGGCGATCTTACCTGGCCAATCGTGAGAGACTTGGTAGATGATGTGATCGTTGTGGAAGA TTACGAGATCGTAGATGCCATGAAGCTCTGCTATGAGATCCTTAAAGTTGCTGTGGAACCAAGTGGAGCTATAGGCCTTGCTGCTGCCCTTTCCGAGAAC TTCCATCGACACCCTGCATGGAAGGACTGCAACCACATCGGGATCATACTTTCCGGTGGAAATGTCGACCTTGGTGTCCTGTGGGATTCTCTCCGAAGAT AG
AA sequence Show only first row Show all	>Lus10008490 pacid=23177378 polypeptide=Lus10008490 locus=Lus10008490.g ID=Lus10008490.BGIv1.0 annot-version=v1.0 METEIQLSTEKYAADISSIREAHSRIKPYIHRTPLLTSESLNDLCRRKLYFKCECLQKGGAFKFRGACNAIYSLDDEQAAKGVVTHSSGNHAAALALAAK LRGISSYIVIPENAPECKVENVLRYGGQVVRCESTMHARVDTARKVMEETGALLVHPFNDGRIISGQGTVALELLEQVPHLDTLVVPISGGGLISGVALA AKSINPSLKVFAAEPKGANDSALSKAAGQIVTLPQTDTIADGLRAFLGDLTWPIVRDLVDDVIVVEDYEIVDAMKLCYEILKVAVEPSGAIGLAAALSEN FHRHPAWKDCNHIGIILSGGNVDLGVLWDSLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	0	1
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	1.4	0.9351
AT1G76480			unknown protein		Lus10006035 [exp]	1.7	0.9407
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10003406 [exp]	2.4	0.9207
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	2.8	0.9261
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	3.0	0.9265
AT2G34730			myosin heavy chain-related (.1...		Lus10023264 [exp]	3.7	0.9091
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	5.3	0.8955
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	7.5	0.9157
AT5G41800			Transmembrane amino acid trans...		Lus10001908 [exp]	8.7	0.8863
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	10.5	0.9126

Compare expression of checked genes

Lus10008490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.