Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15730 495 / 1e-174 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT5G54590 404 / 1e-138 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT3G19300 233 / 9e-70 Protein kinase superfamily protein (.1) AT3G58690 224 / 4e-69 Protein kinase superfamily protein (.1) AT4G02010 231 / 6e-69 Protein kinase superfamily protein (.1) AT1G67720 232 / 4e-68 Leucine-rich repeat protein kinase family protein (.1) AT2G19210 228 / 7e-67 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G79620 229 / 8e-67 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 228 / 1e-66 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G18810 224 / 3e-66 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008540 [exp] 812 / 0 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 384 / 8e-131 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 381 / 1e-129 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 244 / 5e-74 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 242 / 5e-73 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10021003 [exp] 225 / 2e-68 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030741 [exp] 222 / 2e-68 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10015057 [exp] 232 / 6e-68 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 231 / 1e-67 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101400 [exp] 600 / 0 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 597 / 0 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 391 / 7e-134 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G131200 [exp] 388 / 9e-133 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 239 / 3e-72 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 239 / 4e-72 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.019G094200 [exp] 234 / 5e-72 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G132100 [exp] 239 / 9e-71 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 238 / 2e-70 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094300 [exp] 237 / 5e-70 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008491 pacid=23177360 polypeptide=Lus10008491 locus=Lus10008491.g ID=Lus10008491.BGIv1.0 annot-version=v1.0 ATGGTTTCTAAAGGGGACTTGATCGTGATCGGAATATCGGTTGGGTTGGCACTTGGAATGATCATAGCAGTGCTTCTGTTCCTCTTTCTGAGATGGTACA AGAATCGTGTTCATCTCAAAAAATGTGCAGCCAATGAGCAGCAGCGTAGTCCAACGTCGTCTGTCCCTATTCGAGTCAATGGCTTCGATGCTTCCACTGA TTTCAGTGCATCAATCACCATTCGCGAGACTCAGCTGGCAAACAAGGTTCCTTCCCCGCATTCCTCTTGGTGGAGTCGACCCAGCAAGGATCATTTCGTT TCAGTGGCTGGAGTGGTTCGGTACTCTTACAAGGATATCCAGAAAGCTACACAGAATTTCACGACTAGTGTTGGACAGGGTTCGTTTGGTGTGGTGTTTA AGGCTGTCCTGTCTTCTGGCGAGACTTATGCTGTAAAAGTACTTGCCTCCAGTTCAAAGCAGGGGGAGAAGGAGTTCCAAACTGAGGTTTGCCTACTGGG GAGGCTGCATCACCGCAATCTGGTGAACTTGATTGGTTATTGTGTAGATAAGGGGCAACGTATGTTGATATACGAGTTCATGAGTAATGGGAGCTTGGCA AACCTTCTGTACAATAACAGCACGAGCATACTAAGTTGGGAAGACAGGCTCCAAATTGCTCTCGATATTTCACATGGCATTGAGTATCTTCATGAAGGGG CAGTTCCACCTGTTATACATAGAGACTTGAAGTCTGCTAACATCTTGTTAGACCAATCAATGAGAGCTAAGGTGGCTGATTTTGGTCTGTCGAAGGAAGA TGCATTTGATGAACATGCTTCTGGTCTCAAGGGCACTTACGGCTACATAGATCCAGTGTACATAGCAACGAATCGGTTCACTACAAAGAGTGACATCTAC AGTTTTGGTGTTATCATCTTTGAACTTATTACCGGCATCCATCCCCATCAGAATCTCATGGAATACGTCAATCTAGCGGCAATGAGTTCGGACGGAGTTG ATGAAATAGTAGACGAGAAACTGTCGGGGAAATGCGAGATTCAAGAAGTGAGGGAGCTAGCTAACATTGGCAAAAAATGCTTGCATAAATTCCAGAGAAA GAGACCAATGATAGGTGAAGTTTCACAGGCTATATTGAAGATAAGACAACGACACCTTGTGAAGCAAGACACCATGTCTACACAAGCAAGTTTCTCACGG GTGCTAAGCAGGATACAGAGTCAGCATATAGAATTGAGTAGGATAACCAGCTTCCAAGATGGTGATTCATAA
AA sequence Show only first row Show all	>Lus10008491 pacid=23177360 polypeptide=Lus10008491 locus=Lus10008491.g ID=Lus10008491.BGIv1.0 annot-version=v1.0 MVSKGDLIVIGISVGLALGMIIAVLLFLFLRWYKNRVHLKKCAANEQQRSPTSSVPIRVNGFDASTDFSASITIRETQLANKVPSPHSSWWSRPSKDHFV SVAGVVRYSYKDIQKATQNFTTSVGQGSFGVVFKAVLSSGETYAVKVLASSSKQGEKEFQTEVCLLGRLHHRNLVNLIGYCVDKGQRMLIYEFMSNGSLA NLLYNNSTSILSWEDRLQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDQSMRAKVADFGLSKEDAFDEHASGLKGTYGYIDPVYIATNRFTTKSDIY SFGVIIFELITGIHPHQNLMEYVNLAAMSSDGVDEIVDEKLSGKCEIQEVRELANIGKKCLHKFQRKRPMIGEVSQAILKIRQRHLVKQDTMSTQASFSR VLSRIQSQHIELSRITSFQDGDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008491 [exp]	0	1
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	1.4	0.9257
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	7.5	0.9193
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	7.9	0.9245
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	9.3	0.9220
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	9.5	0.9140
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	9.9	0.9107
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	10.7	0.9161
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	14.5	0.9040
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	14.9	0.9061
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	15.2	0.9130

Compare expression of checked genes

Lus10008491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.