Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008529 [exp] 76 / 1e-17 AT3G18990 87 / 8e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 45 / 3e-06 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 44 / 8e-06 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008493 pacid=23177394 polypeptide=Lus10008493 locus=Lus10008493.g ID=Lus10008493.BGIv1.0 annot-version=v1.0 ATGAATGAAAAATTGAGGCAAGGGAGAGGTTCTCGAAATTTCTTCAGGGTCATGGATCAAAAGTACTCACCCGATCCAACGAAATTGGTTCTGGCAGTGA AATTAGTGGAGAATGACGACGAGGGGCTCGGAAAAGAAGTGGCTTTCGATGTTTCTGATGGGAAAACATGGAAGATGAGGAATGTTGCTAGATTTGAAAC AACAGTTGCACAAGGGTTTGAAAACACCCGCCTGAGTGGTACACCAGCGGGTCAGAAGACCATCGAAGCTGCAATGCATAAAACCAGCCCCTATTGCATA TCTTCCTGGTACGTTTTCGAAAGACCATCTAGACCCAGGTTGCAAGTGGATGGATGGCCATAG
AA sequence Show only first row Show all	>Lus10008493 pacid=23177394 polypeptide=Lus10008493 locus=Lus10008493.g ID=Lus10008493.BGIv1.0 annot-version=v1.0 MNEKLRQGRGSRNFFRVMDQKYSPDPTKLVLAVKLVENDDEGLGKEVAFDVSDGKTWKMRNVARFETTVAQGFENTRLSGTPAGQKTIEAAMHKTSPYCI SSWYVFERPSRPRLQVDGWP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008493 [exp]	0	1
AT1G48170			unknown protein		Lus10022781 [exp]	4.5	0.7342
AT5G52280			Myosin heavy chain-related pro...		Lus10016240 [exp]	6.2	0.6853
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10019331 [exp]	10.0	0.6725
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	10.3	0.7506
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	11.8	0.6951
AT2G18460		LCV3	like COV 3 (.1)		Lus10014314 [exp]	14.4	0.6131
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	15.6	0.6919
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	18.7	0.7102
AT1G48170			unknown protein		Lus10022783 [exp]	20.1	0.6966
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	20.8	0.7012

Compare expression of checked genes

Lus10008493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.