Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63500 825 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 811 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 761 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G59010 742 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 706 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 650 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 595 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 571 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 565 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 546 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008530 [exp] 964 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 875 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 739 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10027743 [exp] 735 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10037856 [exp] 734 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 734 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10040719 [exp] 727 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10018849 [exp] 702 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10016454 [exp] 695 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104700 [exp] 848 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 848 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G082400 [exp] 803 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 789 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.006G093900 [exp] 756 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 748 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 736 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 731 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 596 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 594 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008494 pacid=23177387 polypeptide=Lus10008494 locus=Lus10008494.g ID=Lus10008494.BGIv1.0 annot-version=v1.0 ATGGGCTGCGAGTGTTCCAAGCTCTCTTCATGTTGTTGGAATTCGGAATACAATGAAACGGTTCCCGAGAACCACGAAGAAGAAAATGAGGAGAAAGGTG AAAGTGATGACCTGCCTGCATTTCGCGAATACTCCATTGACACAATCAGAATGGCAACTTCTGGTTTTGCTGTGGAGAACATTGTGTCTGAGCATGGTGA GAAGGCTCCTAATGTTGTTTATAAGGGCAAGCTTGATAATCAGAGAAGGATTGCTGTCAAACGTTTCAACAGATCGGCCTGGCCTGATACAAGGCAGTTT TTGGATGAAGCAAGAGCTGTTGGTCAACTCCGGAATCAAAGGCTGGCTAACTTACTGGGCTGTTGTTATGAGGGAGAGGAGAGGCTACTTATTGCAGAAT TTATGCCCAACGATACCCTAGCAAAGCACCTATTCCATTGGGAAACTCAACCAATGAAATGGGCCATGCGACTCCGAGTGGCTCTACATTTAGCTCAGGC CCTGGAATATTGTACAAGCAAAGGTCGTGCTCTGTATCATGATCTGAATGCTTATAGAATTCTTTTTGATGATGAAGCAAACCCTCGACTTTCATGCTTT GGTCTCATGAAGAATAGTAGAGACGGAAAAAGTTACAGTACGAACTTGGCGTTCACTCCTCCCGAGTATCTAAGAACAGGGAGAGTAACAGCAGAGAGTG TAATGTATAGCTTTGGCACCCTTTTGCTTGACCTACTCAGTGGAAAGCATATTCCTCCAAGCCACGCACTGGACTTGATACGAGATCGGAACATTCAAAT GCTGACAGATTCCTGCTTGGAAGGCCAATTCACCAATGACGATGGGACTGAGTTGGTGAGGTTAGCTTCTCGATGTTTACAGTTTGAGCCCCGGGAGAGG CCAAATGCCAAGTCGTTGGTGACCGCTTTTATTCCTCTTCAGAAGGAAACTGAGGTTCCTTCACATGTATTGATGGGTATACCGGATGTTGCTGCAGCTG TACCTCTGTCACCCCTTGGTGAATCTTGCTTAAGGAATGATTTGACTGCAATTCATGAGATCCTAGAAAAGCTTGGATATAAAGATGACGAGGGTGTTGC TACTGAGCTCTCGTTCCAGATGTGGACTAACCAAATGCAGGAAACGCTAAATTCGAAGAAGAAGGGTGATTCCGCATTTCGGCACAAGGACTTGAAAGCT GCAATTGAATGCTATTCCCAGTTCATAGAAGTCGGAACGATGATTTCGCCAACCGTGTATGCTCGTAGAAGCTTGTCTTACCTCATGAGCGACATGCCAC AAGAAGCCCTCAACGATGCGGCTCAAGCCCAAGTGATATCCCCCGTTTGGCACATCGCATCCTACTTGCAAGCCGCTGCTCTTTTCGCCCTTGGAAAAGA TGCCGAAGCACATGCAGCTCTCAAGGACGGAACATCCCTCGAAACCGAAAAGACTCAAAACTTGTAG
AA sequence Show only first row Show all	>Lus10008494 pacid=23177387 polypeptide=Lus10008494 locus=Lus10008494.g ID=Lus10008494.BGIv1.0 annot-version=v1.0 MGCECSKLSSCCWNSEYNETVPENHEEENEEKGESDDLPAFREYSIDTIRMATSGFAVENIVSEHGEKAPNVVYKGKLDNQRRIAVKRFNRSAWPDTRQF LDEARAVGQLRNQRLANLLGCCYEGEERLLIAEFMPNDTLAKHLFHWETQPMKWAMRLRVALHLAQALEYCTSKGRALYHDLNAYRILFDDEANPRLSCF GLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQFTNDDGTELVRLASRCLQFEPRER PNAKSLVTAFIPLQKETEVPSHVLMGIPDVAAAVPLSPLGESCLRNDLTAIHEILEKLGYKDDEGVATELSFQMWTNQMQETLNSKKKGDSAFRHKDLKA AIECYSQFIEVGTMISPTVYARRSLSYLMSDMPQEALNDAAQAQVISPVWHIASYLQAAALFALGKDAEAHAALKDGTSLETEKTQNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	0	1
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	1.0	0.9458
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	3.0	0.9261
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	4.9	0.9067
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	6.3	0.9269
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	6.9	0.9169
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	8.5	0.8589
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	8.7	0.9083
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	10.2	0.8840
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	13.0	0.9009
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	13.4	0.8950

Compare expression of checked genes

Lus10008494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.