Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52905 174 / 1e-55 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008532 [exp] 251 / 2e-86 AT3G52905 156 / 1e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104800 [exp] 204 / 2e-67 AT3G52905 219 / 7e-74 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0580 [flax] [poplar] YqgF PF03652 [flax] [poplar] RuvX Holliday junction resolvase
Representative CDS sequence Show only first row Show all	>Lus10008496 pacid=23177355 polypeptide=Lus10008496 locus=Lus10008496.g ID=Lus10008496.BGIv1.0 annot-version=v1.0 ATGAAGTACAGGAATGCTTTGATGTTGGCTCGCTTCCTCGGAACGAAGCAGGATGGTAGGTTGCTTGGATTGGATGTTGGGGATAAGTATGTCGGCCTAG CTATATCTGATTCCCGGAACAAAATTGCATCACCTTTAAGTGTTGTGGTGAGAACGAAATCCAATGTTGATTTGATGGCTGAGGATTTCCAGAACCTGGT CTCTGAGCTTTCCCTGGTTGGATTTGTTGTAGGATGCCCGATGGACAGATTCTGTCGGCCGGCAGATGGGAACAAGGTGAAGCATTTTGTGGATGACATC TCTACAACAGGGAAGCTAAAGGATGTAAACTATACTTACTGGAACGAGTGCTTTACATCAAAGGTCGTTCAGTGTCTGGTGGAGCCGAAGAATTTTCATC CTTTTGAAGCAAAAACCATAGTTGACAAGTTTGCTGCAGTTACAATCCTTCAGGGATACCTAGACTATATGAACAGGAAGCTAGAGTTAGATACACGGGA AGAGAATACTTCAACTGATGTAAGTTGGGGTTCGAATTCGACACCATACTACCATTTCTTTCAATTCGTTAATTATGTGCCAAAATGA
AA sequence Show only first row Show all	>Lus10008496 pacid=23177355 polypeptide=Lus10008496 locus=Lus10008496.g ID=Lus10008496.BGIv1.0 annot-version=v1.0 MKYRNALMLARFLGTKQDGRLLGLDVGDKYVGLAISDSRNKIASPLSVVVRTKSNVDLMAEDFQNLVSELSLVGFVVGCPMDRFCRPADGNKVKHFVDDI STTGKLKDVNYTYWNECFTSKVVQCLVEPKNFHPFEAKTIVDKFAAVTILQGYLDYMNRKLELDTREENTSTDVSWGSNSTPYYHFFQFVNYVPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52905			Polynucleotidyl transferase, r...		Lus10008496 [exp]	0	1
AT5G63220			unknown protein		Lus10036505 [exp]	10.2	0.8711
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	11.2	0.8853
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	15.5	0.8657
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	17.8	0.8775
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	18.8	0.8778
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	23.0	0.8742
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	30.2	0.8688
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10014714 [exp]	32.6	0.8604
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	33.0	0.8714
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	33.7	0.8651

Compare expression of checked genes

Lus10008496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.