Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63470 173 / 5e-51 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 137 / 2e-37 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 124 / 1e-32 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT2G45850 122 / 4e-32 AT-hook AT hook motif DNA-binding family protein (.1.2) AT2G33620 115 / 1e-29 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT5G62260 110 / 3e-27 AT-hook AT hook motif DNA-binding family protein (.1) AT3G04590 105 / 6e-26 AT-hook AT hook motif DNA-binding family protein (.1.2) AT4G00200 104 / 8e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 104 / 4e-25 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 102 / 2e-24 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008535 [exp] 480 / 2e-171 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10008533 [exp] 458 / 5e-163 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10001997 [exp] 256 / 5e-84 AT1G63470 174 / 1e-51 AT hook motif DNA-binding family protein (.1) Lus10037858 [exp] 119 / 9e-31 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10004022 [exp] 117 / 3e-30 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 117 / 3e-30 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10015027 [exp] 117 / 4e-30 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 115 / 2e-29 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10030381 [exp] 114 / 6e-29 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126500 [exp] 248 / 2e-80 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.001G104900 [exp] 233 / 1e-74 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.014G082100 [exp] 149 / 3e-42 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 142 / 1e-39 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.002G148600 [exp] 122 / 3e-32 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 122 / 4e-32 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 122 / 7e-32 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.001G143500 [exp] 118 / 3e-30 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 118 / 3e-30 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.003G090900 [exp] 117 / 7e-30 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain CL0615 [flax] [poplar] PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10008497 pacid=23177377 polypeptide=Lus10008497 locus=Lus10008497.g ID=Lus10008497.BGIv1.0 annot-version=v1.0 ATGGCATTATCTAGCGGGTCAAATCCGTATTACCTCCAGAGAGGGCCTAGTTATGGTGGGTCTGGTGGGTACGGGTCACAAGCTGGTCCGTTGCATTCCC CACCACCACAATTCAGGAACTCTCCAACCCCAAATTTCCAGATTCAGAACAATGCCAGTAGGGCTGGATCATCATACTCAATAGACCACTCAAATGTGGT GAATTCTTCTTCTGGTCATGGACATGGAATTGATATGAGTGCTCCTCCCCCTCCTACGAGTGAGCAGCCCGTGAAGAAGAAGAGAGGGAGGCCTAGGAAG TATGCCTCAGATGGCCAGGTCTCACTTGGGTTGTCTCCTTTGCTGATAAAGCCTAAAAAATCTTCTTCAGAGGGAGATCCAATGAGCCCTTCTAAACGTA GAGGACGGCCTCCCGGCACTGGGAGGAAGCAACGGCTGGCTGATCTAGGTGATTGCTATGACATTGTTGCTAAAATACTGTCATTTGCACAGCAGAGGCC TAGAGCTGTCTGTATCTTGTCTGGCACTGGTACAGCTTCCTCTGTAACCTTGCGTCAACCAGCATCTGCGGGGCCAACTGCCACATATGAGGGCCGATTC CAGATACTGTGCTTGTCAGGTTCCTACTTGGTTGCAGAAGATGGAGGTCCCACTGACCGAACAGGTGGAATGAGTGCTTCGCTTTCAACTCCTGATGGCC ATGTCATCGGTGGTGCAATCGGTATGCTTACCGCTGCAAGCCTAGTACAGAAGCCAGAAAGACCAGTTGGACGACCGAAGAGCGATAAAAGTCAACGCAG CAACGAGAAATTAGCCATTGACGCCCCTGATAGCGCTCCAACTACTGCAACGAACGAGCATCATCATTACATGCCTTCTCCGATGGGGGTCTGGCCAGGC TCCCAGTCTGCCGATCTGAGAAGCAACCCCCACACGGGCATTGACTTAACACGAGGCTGA
AA sequence Show only first row Show all	>Lus10008497 pacid=23177377 polypeptide=Lus10008497 locus=Lus10008497.g ID=Lus10008497.BGIv1.0 annot-version=v1.0 MALSSGSNPYYLQRGPSYGGSGGYGSQAGPLHSPPPQFRNSPTPNFQIQNNASRAGSSYSIDHSNVVNSSSGHGHGIDMSAPPPPTSEQPVKKKRGRPRK YASDGQVSLGLSPLLIKPKKSSSEGDPMSPSKRRGRPPGTGRKQRLADLGDCYDIVAKILSFAQQRPRAVCILSGTGTASSVTLRQPASAGPTATYEGRF QILCLSGSYLVAEDGGPTDRTGGMSASLSTPDGHVIGGAIGMLTAASLVQKPERPVGRPKSDKSQRSNEKLAIDAPDSAPTTATNEHHHYMPSPMGVWPG SQSADLRSNPHTGIDLTRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008497 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019274 [exp]	3.3	0.8993
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	5.8	0.8967
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008533 [exp]	8.7	0.8733
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	10.2	0.8785
AT5G66800			unknown protein		Lus10009349 [exp]	18.3	0.8200
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	21.6	0.8640
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	24.8	0.8657
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10024796 [exp]	31.2	0.8381
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	31.4	0.8627
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	33.2	0.8539

Compare expression of checked genes

Lus10008497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.