Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008536 [exp] 355 / 2e-122 ND / Lus10022836 [exp] 162 / 4e-46 ND / Lus10038309 [exp] 154 / 4e-42 ND / Lus10005392 [exp] 145 / 3e-39 ND / Lus10024122 [exp] 140 / 2e-37 ND / Lus10005393 [exp] 124 / 5e-32 ND / Lus10029057 [exp] 124 / 2e-31 ND / Lus10024121 [exp] 122 / 1e-30 ND / Lus10023559 [exp] 103 / 2e-24 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047300 [exp] 190 / 6e-56 ND / Potri.001G388200 [exp] 172 / 4e-49 ND / Potri.001G388600 [exp] 170 / 2e-48 ND / Potri.001G388100 [exp] 169 / 2e-48 ND / Potri.011G108300 [exp] 169 / 3e-48 ND / Potri.001G388450 [exp] 168 / 1e-47 ND / Potri.001G387900 [exp] 168 / 1e-47 ND / Potri.001G388801 [exp] 168 / 2e-47 ND / Potri.001G388300 [exp] 159 / 3e-46 ND / Potri.011G108200 [exp] 157 / 8e-44 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10008498 pacid=23177393 polypeptide=Lus10008498 locus=Lus10008498.g ID=Lus10008498.BGIv1.0 annot-version=v1.0 ATGACGTGCTGCCTTCAACTTCAACCCACAGAGTACCACAATTTCACCCCCTTCGTCGGACTCACCACCACGACTCCGGCCAGCCGCTCACTTGGCGGAT CGTGTGTACGTCGAGAAGTACAAGAGAGCGGTGGAGCTGATGAAGGCGCTCCCCACAACGGATCCGAGATCCCTCTTTCAGAAGGCGAATCTACATTGCG CCTATTGCAACGAGGGTTACAGACAGAGTGGATTTCCCGACCTACCGGTCCAGATTTACATCTCCTGGCTGTTCTACCCATTCTACGAGAGGATCCTAGG AAAACTGATCGGGGATCCAACATTCGCATTGCCTTTTCGGAATTGGGATGCTTCGGAAGGGATGCAATGCCGTCCATTTACACAAACGATCCGACTTCAA CAGTATACGATCCTAGGCGAAACCCCTACCACAAGCCACCAAACTTAATCACCTTGGATTGGGGCTTCCACGAGTCCGAGAACACAACGGACCAAGAGCG TATTGCAAGCGATGTCGGTTTCATGCATGCTCAAATGGTTGGATCTATCGGGAACACCTCCGAGTTTCTTGGGATGCCATATCGGGCGGGGGATCAACCT TATCCACCGCAATTTGGCGGTTCTGTAGAGATGAAGCCTCATGGTCGGGTGCACGAATGGACCGGAGTCAACAGGACGGCACATTTGGAAGATATGGGAT CGTTCTACACTTCAGGGAGGGATCCGATGTTCTTTGCGCACCACGCTAACGTTGACCGGGTGTCGACTTTGTCGAAGAGTATAGGAGGAAGGGATTATGA AAGTGATGATTGGCTCAACTCAACCTTTCTCTTCCATGATGAAGATGCTCGTCCAGTGCGGGTGCAGGTGAGTGACTGCATCGACGAAAGACACTTAGGT TATGCGTACCAAACTGTCCACATCCCGTGGCTTTGA
AA sequence Show only first row Show all	>Lus10008498 pacid=23177393 polypeptide=Lus10008498 locus=Lus10008498.g ID=Lus10008498.BGIv1.0 annot-version=v1.0 MTCCLQLQPTEYHNFTPFVGLTTTTPASRSLGGSCVRREVQESGGADEGAPHNGSEIPLSEGESTLRLLQRGLQTEWISRPTGPDLHLLAVLPILREDPR KTDRGSNIRIAFSELGCFGRDAMPSIYTNDPTSTVYDPRRNPYHKPPNLITLDWGFHESENTTDQERIASDVGFMHAQMVGSIGNTSEFLGMPYRAGDQP YPPQFGGSVEMKPHGRVHEWTGVNRTAHLEDMGSFYTSGRDPMFFAHHANVDRVSTLSKSIGGRDYESDDWLNSTFLFHDEDARPVRVQVSDCIDERHLG YAYQTVHIPWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008498 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005661 [exp]	1.0	1.0000
					Lus10016963 [exp]	2.0	0.9096
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	3.0	0.8596
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	3.2	0.7977
					Lus10016158 [exp]	4.0	0.8335
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	11.2	0.7889
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	23.8	0.7882
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	26.4	0.7733
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	28.5	0.7514
					Lus10024141 [exp]	30.0	0.7514

Compare expression of checked genes

Lus10008498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.