Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19410 664 / 0 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 461 / 2e-155 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 447 / 3e-150 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G53270 406 / 3e-134 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 405 / 3e-133 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55090 309 / 2e-95 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT5G13580 303 / 2e-93 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55100 299 / 3e-92 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G53510 293 / 4e-89 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT3G55110 291 / 1e-88 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000737 [exp] 1047 / 0 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 817 / 0 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 808 / 0 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 440 / 5e-147 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 381 / 1e-123 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 378 / 2e-122 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 316 / 2e-97 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 275 / 2e-86 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 202 / 5e-56 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070100 [exp] 740 / 0 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 438 / 1e-146 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 431 / 2e-143 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 425 / 2e-141 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 426 / 4e-141 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 421 / 1e-139 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 416 / 5e-138 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 308 / 1e-94 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 307 / 2e-94 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 305 / 8e-94 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10008500 pacid=23177405 polypeptide=Lus10008500 locus=Lus10008500.g ID=Lus10008500.BGIv1.0 annot-version=v1.0 ATGCCGGCCTGCTTCAACTCTCCGTCAGATTGGATCGCCGAGGAAGGCGACTCCGCCATCCTCTATTCCCCCGATGGATCGACCACCACTCCCAGTGTAG GTTCCTCCTCCTTCTGCCTTTCCATTCCTCCGCCTCCTTGGCCGACTGCTTCGTACGATCTCACCGTGACAAACCTCTCGTTCACCGTCACCCCGACGAA ATCCTCCTTCTGGCGGTCGAGTCTGAACCCGGTCAACATCCTGAAATCCGTCTCGTTCCAGGCCAGAAGCTCTGAAATCCTCGCCATTGTTGGTCCTAGC GGTACAGGGAAATCTACACTCCTCCGGTTCGTAGCTGGCAGGGTAAGGAGCTCCGAATTCGATCCCAAGTCGGTCGCGATCAATGGCCGGGCGATCTCAA CACCTTCTCAGTTGAGGAAGATTTGTGGATTTGTACCGCAAGAGGATAATTTGCTTCCTCTGCTTACTGTCAGGGAAACGCTAATGTACAGTGCCAAGTT CTGTTTGCGTGAGCTTACCTTGAAGGAGAAGCAAGAGAAAGTTGAAGGGCTGCTATCCGAGCTAGGACTCGTTCACGTGGCGGAAAGCTTCGTCGGCGAC GAAGATGTTAGAGGAATCTCCGGTGGAGAGAGGAAGCGAGTGTCCATCGGCGTAGATATGATCTCGGACCCTCCGATCATCATCCTTGACGAGCCGACTT CAGGTCTCGACAGTAGCTCGGCGCTTCAGGTTATCCAGCAGCTTTCCTCAATTGCCAGGGTTAAGCAGAGGACGATCGTGATCTCGATTCATCAGCCGAG TTACAGAATCCTCGAACTCATCCCCAATCTACTAATACTCTCTTCCGGCTCCGTCGTTCATAGTGGCAGCTTGCAATCTCTGGAGGATTCAATTACCGAT CTCGGGTTCCGGATTCCGCAGCAATTGAATCCGATCGAGTTCGCCATGGAAATTATTCAATACCTCGAAGACTCAGCGAAATCACAAACCTTAATTCCGC CTGAAACAGAGATAACGACGACATCAATTTGGCAAGACGAACCAGCCGTTCCCTCAAAATCAATAATCGATTTCTCCGAAATCGGAAATCTCTGCTCCAG ATCATGGAAGATTATCTACAGAACGAAGCAACTTCTCGCTGCTCGAACGATGCAAGCAGTAATCGGAGGCTTCTTACTCGGCAGCGTATACATCAACGTA AAGAAAGACGACGGAGGAATCACACAACGATTAGGCCTATTCGCCTTCAGCTTAAGCTTACTCCTATCCTCCACAGTCGAAGCACTCCCCATCTACCTCC AAGAGCGGCGAGTACTGATGAAGGAATCATCCAGAGGAAGCTACAAGATCTCGAGCTACATAATCGCTAACACAATCGTCTTCCTCCCGTTCCTCCTCGC CGTTGCTGTCCTCTTCTCCGTCCCTGTATACTGGCTCGTCGGACTCAACCCGTCGGCTGCTGCATTCGCGTTCTTCACGTTCACCGTCTGGCTGATCGTC CTGATGGCCAGCTCGCTGGTGATGTTCCTCAGCGCTATCTCGCCGAACTTTATCGTAGGGAACTCGCTAATTTGTGCCGTGTTGGGAGCGTTCTTCCTCT TCTCCGGTTACTTCATCCCCAAGGATAAGATACCAAAGTACTGGATCTTCATGTACTATCTTTCGCTGTATAGGTACCCGCTCGATTCGCTTCTGACGAA CGAGTACTGGGGGATGAGGGAGGATTGTTTCCGGTGGTTACCATCGGCGGGAGGTGACAACGACGATGGGATGAGGTGTTTGTTGACGGGGAATGATGTG CTGAAGAGCAGCGGGCTGGAGAGGGATCCCCGGTGGGAGAACGTTGGGATAATGGTTGGGTTTTTCGTGTTGTATCGGTTTCTTTGTTGGGTTATTCTGG TTCGGAAGGCTGCACGGACCACTATTTAG
AA sequence Show only first row Show all	>Lus10008500 pacid=23177405 polypeptide=Lus10008500 locus=Lus10008500.g ID=Lus10008500.BGIv1.0 annot-version=v1.0 MPACFNSPSDWIAEEGDSAILYSPDGSTTTPSVGSSSFCLSIPPPPWPTASYDLTVTNLSFTVTPTKSSFWRSSLNPVNILKSVSFQARSSEILAIVGPS GTGKSTLLRFVAGRVRSSEFDPKSVAINGRAISTPSQLRKICGFVPQEDNLLPLLTVRETLMYSAKFCLRELTLKEKQEKVEGLLSELGLVHVAESFVGD EDVRGISGGERKRVSIGVDMISDPPIIILDEPTSGLDSSSALQVIQQLSSIARVKQRTIVISIHQPSYRILELIPNLLILSSGSVVHSGSLQSLEDSITD LGFRIPQQLNPIEFAMEIIQYLEDSAKSQTLIPPETEITTTSIWQDEPAVPSKSIIDFSEIGNLCSRSWKIIYRTKQLLAARTMQAVIGGFLLGSVYINV KKDDGGITQRLGLFAFSLSLLLSSTVEALPIYLQERRVLMKESSRGSYKISSYIIANTIVFLPFLLAVAVLFSVPVYWLVGLNPSAAAFAFFTFTVWLIV LMASSLVMFLSAISPNFIVGNSLICAVLGAFFLFSGYFIPKDKIPKYWIFMYYLSLYRYPLDSLLTNEYWGMREDCFRWLPSAGGDNDDGMRCLLTGNDV LKSSGLERDPRWENVGIMVGFFVLYRFLCWVILVRKAARTTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10008500 [exp]	0	1
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	2.2	0.9549
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	4.2	0.9530
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	4.6	0.9461
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	9.2	0.9350
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	9.2	0.9362
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	9.2	0.9362
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	14.7	0.9242
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	14.8	0.9188
AT1G24405			unknown protein		Lus10036923 [exp]	15.0	0.9247
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	15.5	0.9234

Compare expression of checked genes

Lus10008500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.