Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49601 202 / 4e-55 unknown protein AT1G72100 43 / 0.0008 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000736 [exp] 490 / 5e-159 AT3G49601 207 / 2e-57 unknown protein Lus10034691 [exp] 90 / 4e-21 AT3G49601 61 / 7e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233000 [exp] 292 / 2e-85 AT3G49601 201 / 1e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008501 pacid=23177401 polypeptide=Lus10008501 locus=Lus10008501.g ID=Lus10008501.BGIv1.0 annot-version=v1.0 ATGTATAACGGGATAGGATTACAGACCCCAAGGGGGTCGGGAACTAATGGGCACATACAGACTAACAAGTTCTTCGTGAGGCCAAGGACTGACAAGGTTG CTCATAGCTCCAAGGGATTCGCTGACGACCAGGGCACTGCTGGGATAACAAAAAAGCCCAACAAGGACATCCTTGAGCACGACCGCAAGCGGCAGATTCA GCTCAAGCTTGTGGTGCTTGAAGATAAGCTGATTGATCAAGGTTTTACTGATGCTGAGATTGCTGAGAAGCTGGAGGAAGCTCGGGGGATTTTGGAAGCG TCTTCGGCTTTTGAGGAGGCTGGTGGACCTGGGGATTCTAAGTATTCCAACACACAATCTCACCAAGTTGCGGCTAGAAAGGAGAAGCAAATGGAGAAAA TGAGGGCTGCTCTCGGAATTCATTCAGCCGACGACGCTGATAAAGAAGTTGCTGATGATGATGGACTGTTTACTAATGAGAGGAGTGGTCCAAATGATGG GAATATGTGGAATGAGAAACCGGAACATGCTTTTCTGGATAGGGAGTTTGAACGGAAGAAAGATGCTCCAGAAGTTCCGGATCTAGGAAAGGACGATAAG AAGAGAACTTCTGGTGCTTCAAAAAGTAAGAAGAATCATCAGGGTGATACCTCTGATTCTAGTAGCAGTGCGGAGGAGGGTGAACTGATCCGCGGTAAGC ATCGTAAAGGTAGACATGGAAACAGTGATGAAGCTGATAGCGAGTCGGATTATGGAAAGAAGAAACGGGCCTCGAATACGCATCGGAAGGGACGGAAACA GGCGAGTGATAGTGATAATTCTGATTCTTCCAATGACACCGACTCTGATGTTGTTAAGGTGAAAAAAACTTCAAACAGGCACAATAAAAGGAAGCGTAGC AGCAGTAGTGATGACTCTTCTGACAGTAAGGATACTGATTCTGACAATGCCAAGAAGAAGAAGAACAATAAGAAGAGGAAACCTAGGAAGTCTAAGAAAA TAAGAAGACGTGACAGTGAAAGTGAAAGTGATGATTCTTCTGATAGTAAGGATACTGATTCTGACAATGCCACGAAGAAAAAGAACAATAAGAAGAGCAA CCCTAGGAAGTCCAAGAAAATAAGAAGACGTGACAGTGAAAGTGATGATTCTTCTGCCGATGATAGTGACAGAGATGTCATCAGGAATAATGCAAGAGGT GAATCGGAGAAAAGATGGAAGTCTGATGATAGGAGGCGTGACCTTGACTCTGATGATGATTCTGGTTCAGAGCGTAGACTCGAACTGGTGAGAGAAGATG CCAAAACGAGAAGGAGACATGACTCTGATGATGAATTTAATGCTGATGCTCTGGCCAAGAAGGTGAGGATGCAGGGTAAAAGGGACTCTAGAGGCAAGCT TGGAAATGACAAAGGTGAGATCAGAGATGGCCATCTGAGGGATGACGGAGATGCTAAGGAAGAACGTGGAAGGGGCGGCAGAGATGCTAAGGAAGAACGC GGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCG GAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGG AAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGA AGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAA GGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGGCGGCAGAGATGCTAAGGAAGAACGCGGAAG GGACAGCAGAGATGCTAAGGAAGAACGCGGAAGGGACAACAGAGATTCTAAGGAAGAACGTGGAAGGGACGGCAGAGATGCAAAAGAAGAACGTGGAAGG GACATCCATGACGGAAGAGACAAAAGGGACAAACTTGAAAGTGACAGAAGGGATATTCAAGAGGAAAATGGTAGAGACAGAGGGGACAAGAGGGAAGAGC TCGGGAGGAGCAGAAGGCACACTAGGGAAGAGTACAGAAACGAGAAAGTCGATGCCAAGGAAGAGCGTCGAAGTGATAAAAGGGAGATCAAGGAAGAACG TGGAAGAGACAGAATGGAGGTTAGGGACGATCTTGAAAGTAGAGAATATGAAAAGGATAAAAGGGAGATCAGAGAAGAACGCGGAAGAGACAAAAGGGAG GTTAGGGAAGATCATGAAAGCAGAGAAGAAGGCAGAATAGAGAAAAGGGAGAGGGAAGAACGTGGAAGAGACAAAAGGGAGTATAGGGAAGATCATGAAA GTAGAGAGAAACGTGAAATACCCAAAAGTGAGATTAGGGAAGAACGCGGAAGAGACAAAAGGGAGTATAGGGAAGATCATGAAAGTAGAGAGAAACGTGA AATACCCAGAAGGGAGATCAGGGAAGATCGTGGAAGGGACGAAAGGGACAGCAGAGAAGATCGTGAAACTAGAGCAGAACGCAGAAGGGATGACAGAGAG ACAACGGGAGAACGTAGAAGGGATAGGGAGCATGGCAGGGATGAGGATGCTCGTAGAATGAGAAGCTACGACAGAGGTGAAGAACATGGTGAAAAAAGGA AAAGCTATACTGACAAAGATGAAGTTAGAAACCGTGGAATTCAAAGGGATGCAAGAGAGGAAGATGAGCCAGAAGCTAAAGTTCCAGAGGACGGTCGGTT GTCTTCGTCCAAACGAGCCCGTTATGATGACTCAGATGACGAAGAAGACAGGCGCAGAGACAGTCGTCGTGGTCGCCGAGATTGA
AA sequence Show only first row Show all	>Lus10008501 pacid=23177401 polypeptide=Lus10008501 locus=Lus10008501.g ID=Lus10008501.BGIv1.0 annot-version=v1.0 MYNGIGLQTPRGSGTNGHIQTNKFFVRPRTDKVAHSSKGFADDQGTAGITKKPNKDILEHDRKRQIQLKLVVLEDKLIDQGFTDAEIAEKLEEARGILEA SSAFEEAGGPGDSKYSNTQSHQVAARKEKQMEKMRAALGIHSADDADKEVADDDGLFTNERSGPNDGNMWNEKPEHAFLDREFERKKDAPEVPDLGKDDK KRTSGASKSKKNHQGDTSDSSSSAEEGELIRGKHRKGRHGNSDEADSESDYGKKKRASNTHRKGRKQASDSDNSDSSNDTDSDVVKVKKTSNRHNKRKRS SSSDDSSDSKDTDSDNAKKKKNNKKRKPRKSKKIRRRDSESESDDSSDSKDTDSDNATKKKNNKKSNPRKSKKIRRRDSESDDSSADDSDRDVIRNNARG ESEKRWKSDDRRRDLDSDDDSGSERRLELVREDAKTRRRHDSDDEFNADALAKKVRMQGKRDSRGKLGNDKGEIRDGHLRDDGDAKEERGRGGRDAKEER GRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERG RDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRDSRDAKEERGRGGRDAKEERGRDSRDAKEERGRDNRDSKEERGRDGRDAKEERGR DIHDGRDKRDKLESDRRDIQEENGRDRGDKREELGRSRRHTREEYRNEKVDAKEERRSDKREIKEERGRDRMEVRDDLESREYEKDKREIREERGRDKRE VREDHESREEGRIEKREREERGRDKREYREDHESREKREIPKSEIREERGRDKREYREDHESREKREIPRREIREDRGRDERDSREDRETRAERRRDDRE TTGERRRDREHGRDEDARRMRSYDRGEEHGEKRKSYTDKDEVRNRGIQRDAREEDEPEAKVPEDGRLSSSKRARYDDSDDEEDRRRDSRRGRRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49601			unknown protein		Lus10008501 [exp]	0	1
AT3G49601			unknown protein		Lus10000736 [exp]	3.0	0.8408
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10009889 [exp]	3.7	0.7946
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10013179 [exp]	5.9	0.7629
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	6.9	0.7665
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	13.3	0.7428
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	15.6	0.7428
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	18.5	0.7296
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	21.9	0.7352
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10008701 [exp]	22.8	0.6777
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	26.3	0.7879

Compare expression of checked genes

Lus10008501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.