Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44980 68 / 2e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G44950 67 / 4e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 65 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 65 / 3e-11 F-box/RNI-like superfamily protein (.1) AT5G18780 64 / 6e-11 F-box/RNI-like superfamily protein (.1.2) AT3G59200 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G02930 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G02910 61 / 2e-10 F-box/RNI-like superfamily protein (.1.2) AT4G10400 61 / 3e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G14710 61 / 5e-10 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024696 [exp] 184 / 1e-54 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10026190 [exp] 176 / 1e-51 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 171 / 6e-50 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 157 / 9e-45 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 150 / 3e-42 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 144 / 1e-39 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 142 / 4e-39 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 139 / 1e-37 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 135 / 3e-36 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 113 / 2e-28 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 99 / 2e-23 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 99 / 4e-23 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024300 [exp] 70 / 5e-13 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 63 / 8e-11 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104200 [exp] 59 / 2e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 54 / 7e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 52 / 3e-07 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 50 / 9e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 50 / 1e-06 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008502 pacid=23177397 polypeptide=Lus10008502 locus=Lus10008502.g ID=Lus10008502.BGIv1.0 annot-version=v1.0 ATGACCGAGAAGCGCTGCTGCCGAATTAGTAACTGGAATTCTACTTCTGCAGTCGACAGGTTAAGCGAAATTCCCGACGGTATTCTTAGCCACATTCTAT CTTTCCTTAAAACCAACGAAGCTATCCAAACCTCTGTTTTATCCCGACGCTGGGGATGTCATTTATGGAAGCATGTCACGTCGATTGATCTAGATTCCTG TCCCTTTCGAGACGATTTCGCTTGGAGATGTTTCGTCGATAAAGTTCTCTCACTCCGTCATCAGCGTAAACTCGACAAGGTTTGCTTGGTGGACAAGGAC TGTACATACAATCGTCTGGACATATATCATAAGGTCATCCAGTATGCACATTCACATGATGTTCAGCATCTTGTTATCGATCTTCGTGATTATTCCTGGG TCGATTTTTCTAGTCTGTTTGGTTCTGTTGTCCCTTGCAATCTGAAAACCCTAGAATTAAGAGACGTCGACTTTGACGATGGTCCTGCGTGCTTTCGGAA TCTGACTACTTTGAAGCTGGTTAATTGCTGGTTGAATCCTCCTGATTCTGACCTTTCTGTGAATTTTCCTTGTCTGATGAATTTGGACATCCTTGAATGC AAGTCTACAGGCGATGAGGCCGACCAGATGTATGTGACCGCACCACAGGTGCTCAACCTGAGGCTTTCCGGTTCTCGTTGGCTTGATATCGAAATAGATG CACCGAGACTCAGATTCTTCAGGCTTGAACATGCTTGGCCGTGGGACGTGTTAGGATTGCCGAGTTTCAGCCTTCCCTATGTTGATCGTGCAGAAGTTTT GGTGGATGCTAAAGCTCATCACAAGACGTTCGACAGCCATTTGGAGAAACTGTACCAAGGTTTGCTTAATGCAGAATCAGTTGTTCTGCGTTGCCCTACC AGTAAGGGAACCAGTAAGGTGTTCGCCAGGGTTCGTAACTTTTTCGAACAGAGGTTGTCTTCCTTTACGAGACTGGAGTCCCTGGTTTGTGTATCCGGCA ATCGTCCCAAAGTTGTCGAGTGCCGAGTTGAACGGTCTTCTGGTGTCGAGCCAAACTTTAGCTACATCGCTTAG
AA sequence Show only first row Show all	>Lus10008502 pacid=23177397 polypeptide=Lus10008502 locus=Lus10008502.g ID=Lus10008502.BGIv1.0 annot-version=v1.0 MTEKRCCRISNWNSTSAVDRLSEIPDGILSHILSFLKTNEAIQTSVLSRRWGCHLWKHVTSIDLDSCPFRDDFAWRCFVDKVLSLRHQRKLDKVCLVDKD CTYNRLDIYHKVIQYAHSHDVQHLVIDLRDYSWVDFSSLFGSVVPCNLKTLELRDVDFDDGPACFRNLTTLKLVNCWLNPPDSDLSVNFPCLMNLDILEC KSTGDEADQMYVTAPQVLNLRLSGSRWLDIEIDAPRLRFFRLEHAWPWDVLGLPSFSLPYVDRAEVLVDAKAHHKTFDSHLEKLYQGLLNAESVVLRCPT SKGTSKVFARVRNFFEQRLSSFTRLESLVCVSGNRPKVVECRVERSSGVEPNFSYIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44980			F-box/RNI-like/FBD-like domain...		Lus10008502 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	13.9	0.6564
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029944 [exp]	22.4	0.6332
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	33.0	0.6325
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000673 [exp]	94.2	0.5495
					Lus10019938 [exp]	138.7	0.5687
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	224.6	0.5414
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032608 [exp]	240.0	0.5536

Compare expression of checked genes

Lus10008502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.