Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G44450	488 / 4e-169	BGLU15	beta glucosidase 15 (.1)
AT5G44640	487 / 8e-169	BGLU13	beta glucosidase 13 (.1)
AT5G42260	482 / 1e-166	BGLU12	beta glucosidase 12 (.1)
AT3G60130	481 / 4e-166	BGLU16	beta glucosidase 16 (.1.2.3)
AT2G44480	480 / 6e-166	BGLU17	beta glucosidase 17 (.1.2)
AT2G25630	459 / 8e-158	BGLU14	beta glucosidase 14 (.1)
AT5G24550	460 / 1e-157	BGLU32	beta glucosidase 32 (.1)
AT3G60140	457 / 5e-156	BGLU30, SRG2, DIN2	SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1)
AT1G51470	444 / 1e-151	TGG5, BGLU35	THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1)
AT1G47600	442 / 4e-151	BGLU34, TGG4	THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10012687 [exp]	708 / 0	AT2G44480	525 / 0.0	beta glucosidase 17 (.1.2)
Lus10026057 [exp]	570 / 0	AT2G44450	554 / 0.0	beta glucosidase 15 (.1)
Lus10031235 [exp]	544 / 0	AT2G44450	590 / 0.0	beta glucosidase 15 (.1)
Lus10036445 [exp]	541 / 0	AT2G44450	506 / 8e-176	beta glucosidase 15 (.1)
Lus10024065 [exp]	527 / 0	AT5G44640	511 / 2e-178	beta glucosidase 13 (.1)
Lus10031234 [exp]	523 / 0	AT2G44480	563 / 0.0	beta glucosidase 17 (.1.2)
Lus10031808 [exp]	516 / 5e-180	AT2G44480	560 / 0.0	beta glucosidase 17 (.1.2)
Lus10019531 [exp]	516 / 6e-180	AT2G44480	597 / 0.0	beta glucosidase 17 (.1.2)
Lus10020823 [exp]	502 / 2e-175	AT5G42260	383 / 3e-129	beta glucosidase 12 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T085301 [exp]	538 / 0	AT5G44640	575 / 0.0	beta glucosidase 13 (.1)
Potri.003G211100 [exp]	537 / 0	AT5G44640	569 / 0.0	beta glucosidase 13 (.1)
Potri.001G015100 [exp]	523 / 0	AT5G44640	553 / 0.0	beta glucosidase 13 (.1)
Potri.004G040700 [exp]	520 / 0	AT5G44640	548 / 0.0	beta glucosidase 13 (.1)
Potri.001G227300 [exp]	506 / 2e-176	AT2G44480	585 / 0.0	beta glucosidase 17 (.1.2)
Potri.005G059500 [exp]	483 / 1e-166	AT3G60120	517 / 8e-180	beta glucosidase 27 (.1)
Potri.001G227200 [exp]	481 / 3e-166	AT2G44480	614 / 0.0	beta glucosidase 17 (.1.2)
Potri.001G223900 [exp]	474 / 1e-163	AT2G44480	526 / 0.0	beta glucosidase 17 (.1.2)
Potri.001G223800 [exp]	472 / 8e-163	AT2G44480	527 / 0.0	beta glucosidase 17 (.1.2)
Potri.001G223500 [exp]	470 / 5e-162	AT2G44480	526 / 0.0	beta glucosidase 17 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0058 [flax] [poplar]	Glyco_hydro_tim	PF00232 [flax] [poplar]	Glyco_hydro_1	Glycosyl hydrolase family 1

Representative CDS sequence

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>Lus10008503 pacid=23177400 polypeptide=Lus10008503 locus=Lus10008503.g ID=Lus10008503.BGIv1.0 annot-version=v1.0

ATGGGAAACCCTAAGTTACTCTTGTTGCTCTTTCTTCTAGTTGAATTTGTTTCGGAAACACGGGGTTTCCGAAAAGTTTCGGGACATAATGTTCGTGTGA

AACCGTCGACAAATGTACCCTGTTGGTATGAACTCAAACGACGTCAGTTTCCTTCCGATTTCCTGTTTGGAGTCACATCTTCGTCGTATCAACATGAAGG

TGCGACATGGAAAGATGGTAGGCGTCCGAGTATATGGGATGCTTATACTCACGCTAATCCAGATAAAATTAAAAATGGAAGCACGGGTGACGTGGCTGCT

GATTTCTACCATTTATACAAGGATGACATACAGCTAGCAAAGCAAATGGGCTTGAATACTTTCAGGTTTTCACTCTCCTGGTCAAGAATATTGCCAAATG

GGAAGCTTAGTGGGGGAATTAACAAGAAGGGGCTCCAATTTTATAACAATGTTACCAATGAGATCTTAGCACAAGGATTGAAGCCATTTGTGTCGCTAAT

ACATATGGACATCCCTCAAGCTTTACAAGATGAATACGGTGGCTTCTTGAGCAGACAAATTGTGAGTCATTTCCGAGAATATGCGAACTTGTGCTTTAAG

GAATTCGGCGATCGAGTAAAGTACTGGACCACGATAAACGAGCCGTACACATTCGCTAGGGGAGGGTTCGACCAGGGCGATCTAGCACCCGGTCGATGCA

CGAGTTCGAAGAACTGGACTTGCAATGATGGAGGGAACTCGTCGACCGAGCCTTACATTGTGGGTCACAACCAGCTCCTTGCCCATGCAACTGCGGTTCG

GTTGTATAGGCAAAAATATAAGGCGATCCAAAAGGGTATTATCGGAATGGCAATGAACGTGGATTGGTTCTTTCCTTACTCAACGAGTAAGCGTGATAAA

AATGCCGCAAGTAGAGCCCTCGATTTCAACTTCAAATGGTTTATGGATCCAATGTACCACGGTGATTACCCAAAGAGCATGAAGCACCACGTCGGCGATC

GACTCCCTAAATTTTCGGAACAAGAATCGAAGCTCTTGAAAGGGTCGTTCGATTACATAGGAATCAACTACTACACGTCTCGGTATGCCCTCCACGGAGA

CGACATTAATCCTCATCACCCCAATGGCATCGATTCCCACGTCCTACTTACCAATCTTCGTAACGGGAAACTATTGGGTAACAAGACGGTCGCACCGTGG

ATGAACATGTATGGACGTGGTCTATGTGACCTTTTATTGCACATAAAGGACACGTACCAGAACCCATTAGTCTACATTACAGAAAACGGAGTTGCTGACG

CAGGGAATTACACGCATTCGCCGCATAAAGCGCCACCGGATGATGTCATAAGAATTTCCTTCATGAGGGATCATCTTGAAGCCCTTAGAAGGGCTATGAG

AAATGGAGCAAATGTGAAGGGGTACATGGTGTGGACTTTAGTCGATGGATTCGAGTGGCTGAATGGCTACACGATGAAGTTTGGGTTGCACTATGTTGAT

GTCAAGAACCCTTCTGTCAGAATCCCTAAGCTCTCTGCACTTTGGCTCAAGGCTTTCCTCTACAAAAGGCATCCTGATCTATTAATAAAGTTATAA

AA sequence

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>Lus10008503 pacid=23177400 polypeptide=Lus10008503 locus=Lus10008503.g ID=Lus10008503.BGIv1.0 annot-version=v1.0

MGNPKLLLLLFLLVEFVSETRGFRKVSGHNVRVKPSTNVPCWYELKRRQFPSDFLFGVTSSSYQHEGATWKDGRRPSIWDAYTHANPDKIKNGSTGDVAA

DFYHLYKDDIQLAKQMGLNTFRFSLSWSRILPNGKLSGGINKKGLQFYNNVTNEILAQGLKPFVSLIHMDIPQALQDEYGGFLSRQIVSHFREYANLCFK

EFGDRVKYWTTINEPYTFARGGFDQGDLAPGRCTSSKNWTCNDGGNSSTEPYIVGHNQLLAHATAVRLYRQKYKAIQKGIIGMAMNVDWFFPYSTSKRDK

NAASRALDFNFKWFMDPMYHGDYPKSMKHHVGDRLPKFSEQESKLLKGSFDYIGINYYTSRYALHGDDINPHHPNGIDSHVLLTNLRNGKLLGNKTVAPW

MNMYGRGLCDLLLHIKDTYQNPLVYITENGVADAGNYTHSPHKAPPDDVIRISFMRDHLEALRRAMRNGANVKGYMVWTLVDGFEWLNGYTMKFGLHYVD

VKNPSVRIPKLSALWLKAFLYKRHPDLLIKL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10008503 [exp]	0	1

Lus10008503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10008503 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10008503 coexpression network