Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47570 162 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000735 [exp] 236 / 8e-82 AT5G47570 163 / 6e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122200 [exp] 168 / 4e-55 AT5G47570 176 / 2e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008504 pacid=23177402 polypeptide=Lus10008504 locus=Lus10008504.g ID=Lus10008504.BGIv1.0 annot-version=v1.0 ATGGCAGGACGACTGAGCAACGTGGCTTCCCGGATCATGGGCGGAAACGGCATCGTAGTACGATCCGCCGCCGCCTCTCTCCGCGGCCGTTCTGGCATGG GCCTACCCACCGGAAAACACATCGTCCCCAACAAACCACTGGAGGTGAATGACGAATTGGTTTGGGACAACGGCACCCCGTTCCCGGAGCCTTGTATCGA TCGAATTGCTGATACTGTTGGAAAGTATGAAGCTCTAGCTTGGTTGTGTGGAGGTTTGAGCTTCTTTGCCTCGTTAGGCTTACTGGCAGTGTGGAATGAC AAAGCATCTAAGACTCCATTTGTAAGTGTTTCTAAACAGTTCCTCCTTTTACGTATTAGTAAGCTTCACTCTGTGAAATTGGAACTTGAATCTACTGTTT AA
AA sequence Show only first row Show all	>Lus10008504 pacid=23177402 polypeptide=Lus10008504 locus=Lus10008504.g ID=Lus10008504.BGIv1.0 annot-version=v1.0 MAGRLSNVASRIMGGNGIVVRSAAASLRGRSGMGLPTGKHIVPNKPLEVNDELVWDNGTPFPEPCIDRIADTVGKYEALAWLCGGLSFFASLGLLAVWND KASKTPFVSVSKQFLLLRISKLHSVKLELESTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47570			unknown protein		Lus10008504 [exp]	0	1
					Lus10016269 [exp]	3.3	0.8143
					Lus10027007 [exp]	6.5	0.7583
AT1G72020			unknown protein		Lus10009443 [exp]	9.6	0.7441
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	11.7	0.7942
					Lus10000761 [exp]	12.8	0.6763
AT2G44210			Protein of Unknown Function (D...		Lus10005502 [exp]	12.8	0.7038
					Lus10009774 [exp]	14.1	0.7664
AT5G03670			unknown protein		Lus10014378 [exp]	15.3	0.7190
AT4G37810			unknown protein		Lus10011570 [exp]	16.2	0.7604
AT5G63135			unknown protein		Lus10019491 [exp]	17.8	0.7965

Compare expression of checked genes

Lus10008504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.