Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16510 289 / 5e-99 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000734 [exp] 400 / 5e-143 AT4G16510 324 / 2e-113 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135980 [exp] 318 / 1e-110 AT4G16510 342 / 2e-120 YbaK/aminoacyl-tRNA synthetase-associated domain (.1) Potri.003G111100 [exp] 316 / 1e-109 AT4G16510 346 / 7e-122 YbaK/aminoacyl-tRNA synthetase-associated domain (.1) Potri.001G122501 [exp] 67 / 3e-13 AT4G16510 0 / 1 YbaK/aminoacyl-tRNA synthetase-associated domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04073 [flax] [poplar] tRNA_edit Aminoacyl-tRNA editing domain
Representative CDS sequence Show only first row Show all	>Lus10008505 pacid=23177383 polypeptide=Lus10008505 locus=Lus10008505.g ID=Lus10008505.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCCGCAGAAGTAGCGGAGCTGGAGCGAGTCCAGACCGGAATCCTCCACCCAACATCCAAACCTGAAGCCGCTCTCCATATCAACAACGAAG ATACTCGACTTCACCAGCTGCCAAAGACGGCCTCCTCAAACGCCTCCGCTACGACGGAAGACCGTTTATCCGCGATTCTCCGGTCTAACGGCGTCAGCGA CTTCGCCTTCAAGCGAGTTGCCTCGGATTACTACGACTGGCCATACGAATCCCGCCGTGACGTCCTCGTCGCTCCCTCGATTGATCACCTCTGCAAGAGC ATCGTCTTGGTTAACACGCGGGCGCCATCTGATGTAATTGATTGTACTGATCGCAACAACTCCAAGTATTACATCGTTGTTGTTCAGTATACAGCTAGGT TCAATGCTGAATCTGTTAGGAGCTATTTGTATGCACTAAATGAAGGCAAAGTGGCCAAGAAGAAATTCAACTGCATCAAAGACCAAATAATCTTGATTAA TAAAATAAAGGGCTTCGGCCTTCATTTTGATCATCCAGTGAGGCTTGCGCCAGAAGAAACATCGTTCAAGTTAACTGGATATGGACACAATGCAGTCACA TGTATTGGCATGAAAACAGACATACCGGTGATCTTGGACGAGGCAATTGTGAAACTTGCTCCGGATTTCTTCTGGTTAGGCGGTGGCGAGGTTGATCTCA AGCTCGGAATAAGAACTTCCGGATTCATCAGTGCTGTTAATCCTTTCGTCTTCAGCTGCAGCGGGAGCTCATGA
AA sequence Show only first row Show all	>Lus10008505 pacid=23177383 polypeptide=Lus10008505 locus=Lus10008505.g ID=Lus10008505.BGIv1.0 annot-version=v1.0 MEEAAEVAELERVQTGILHPTSKPEAALHINNEDTRLHQLPKTASSNASATTEDRLSAILRSNGVSDFAFKRVASDYYDWPYESRRDVLVAPSIDHLCKS IVLVNTRAPSDVIDCTDRNNSKYYIVVVQYTARFNAESVRSYLYALNEGKVAKKKFNCIKDQIILINKIKGFGLHFDHPVRLAPEETSFKLTGYGHNAVT CIGMKTDIPVILDEAIVKLAPDFFWLGGGEVDLKLGIRTSGFISAVNPFVFSCSGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10008505 [exp]	0	1
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	2.0	0.8548
AT3G53220			Thioredoxin superfamily protei...		Lus10013827 [exp]	4.7	0.8308
AT3G28700			Protein of unknown function (D...		Lus10007271 [exp]	8.4	0.8271
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	10.0	0.8842
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	12.3	0.8139
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	16.3	0.8234
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10037283 [exp]	17.7	0.8658
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	34.1	0.8443
AT1G29820			Magnesium transporter CorA-lik...		Lus10004605 [exp]	39.5	0.8345
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	40.2	0.8225

Compare expression of checked genes

Lus10008505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.