Plant FIBer expression Database

Lus10008508 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47580 506 / 2e-170 ASG7 ALTERED SEED GERMINATION 7, unknown protein
AT4G17250 495 / 3e-166 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000731
[exp]
1190 / 0 AT4G17250 586 / 0.0 unknown protein
Lus10004355
[exp]
788 / 0 AT4G17250 697 / 0.0 unknown protein
Lus10028936
[exp]
583 / 0 AT4G17250 525 / 3e-179 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G123100
[exp]
613 / 0 AT5G47580 725 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
Potri.003G110700
[exp]
608 / 0 AT5G47580 697 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
PFAM info
Representative CDS sequence
>Lus10008508 pacid=23177358 polypeptide=Lus10008508 locus=Lus10008508.g ID=Lus10008508.BGIv1.0 annot-version=v1.0
ATGGAGGATTGTAGTGCAGGAGGGAGCCTGAATTCGGCCAACTACACGTCACCACTACCATGGATAGGACTCTACGTAGCAGCAGCATCGACAGCCTGCG
TGATCGCGATGGCGATGGACCTCGTCCACGCCTTTTGGAACCGAAAGTTCTGGTTCCCAACAAAGTACTTCTCCATCAACGCCACTTCCTTAACCGTGAT
CACAGCGGCGATCAAGTTCTCGGTCGATCTCAACACGCCCATGCCCAGCCGAGTCGACCAGCTCTCCAAGCTCAGCAGCGGGGTGCTGGTCTGCGTGGCG
ATCGCAAACTCCATGCCGTCTTTAGGTACAGTGAAGAACAAGGAAGTCATGATGAACGTGATCGCTTTTACGATTATGGTCCTTACTGTTTTAGTCAACG
TTGCGATACAGTTGGGGACAAGAGTGATCTACATCTGCTGGGAAGAGCATGCTGTGGTGATGTCGCTTATGGCTGCGATGCTGATGATCTTGGTGGGGTC
TGGTCTGGCTGTGCCGAAGATGAAGACCGAGTTAGAGGTCAAGTACAGGAAGAGATATGAACTGGCATTGAGAGAAGGTACAACGACAAAGGATATGAGG
AAAACACCCGAGGAACTGAAGGATGATCTGAGGAAGTTTTGGATAATGGCGCATAGCAGTGACCCTCAATTCGTGCTGGGGCGTTCGGCCACGTGTACTG
CCTCGGGTGCTCTGTGTCTACTCTGCGACATCGTTCTAGCAGAGGCCATGTTGAGGTCGTTTCTTGTGATGCAGGTTTGTTCAGGGGAGTCTGACTACAA
GTGGTCAACCAGTTTAGTCCTGGTTTCGCAGACCGTGGGGGTCGTCGTTGGTAGCGTTGCGCCAGCTATCAGGTGGTTTCACTTCTGTCGGAGGAGGAAA
AGCAAAAGCCGCTATTTCAAAGTGGAGAAGTACTGGATTCAGTATCTGGTGGAGATCAAAGAATGTCCATTCATACACATCAAGAGCGAGTATCTTCGGA
GACTTGCTCATCGCGTGAAGAGCAGAATGCTTGATGCCTGTATCGGAGTACAGATCGCGATCGTAACGGGATGCAAACTGATCCAGTTCATCTCCATCTT
CTTTGTCGGCAGAACTGTAAAGAAGTTAAACAATTCAGACAGAAACAACAGTAGTATCGATCTAAGCCAATTTGTTCTGCATTTGGAAGGCGAGGAAGAG
CTTGTTGAAGTGACCATGAGGAAGAGCTCTAATGCTACAGATCACTGGATGCAAAGGGGGAAAACAAGACAGCCAAAACATCTAACTGACCTGTTGGGAA
ATGCAACCTTAGGTTTCGAGGGGCTAAGAGAATTGGAATTCGAGAACTCGGTTAGCGTGGAAGGTGAATTGCCTCCTCCACGATGCTGCTGTTGGTCTCT
TCCGATAGTAACTTTGACAGCGATCGCAGTTGCACTCCCGAATGTCAGCAGTCGTGCAGTTAAAGACCTGTTAAACGGAGTCCACGAGGGACTTGTATAT
GTCAATCTCGTCGAAGACAACCAAGAGGACAGCAGACAAGATCTTGCTACTACTACTAAAGCGAGAATAGCTGCACATCGTGTGTGGTCAAGTGTCGACA
TTTACAATAAATGGTACAATATAGATCTTCGTAACCTGTCCGTAAAATCCCAATCCACCAGGAAAGTACTTCAAGAACTAGCTGAAGCTGGAAAGAGCAT
GCTTGCAGACTGTAGGAAGAAGAAGAACAGAAACACTTTAAAGTGGAACGCCAAGCGAATAGCAGCCAACTCCATGTACAGAGTTAGCAGCACGATTCTT
CTGCGAAAATGTCACACCAACAACAACAATGAAGCTGATTCGGGGGAGAGAATGTTCGGAGCAGTGGCTGCTATGATCTCCGACGTATTGGCAGCTTGTC
TGACTAACTTGAGACCAGTCATATTCTGCAAGTGTCTGAAGAGCACAATCGAAGAGAGGAAAGTCAAAGTAAGGGAAGCAGTCTACCTCCTTGGCGAGAC
CGAAGAGATAGTGAAACTCCTCGACCAAAGCTCGATCTCCATCGTCTACCCAGACAAGGTCACGAACATCGATAGCTGGCTTTCACTACAAACTCAATAG
AA sequence
>Lus10008508 pacid=23177358 polypeptide=Lus10008508 locus=Lus10008508.g ID=Lus10008508.BGIv1.0 annot-version=v1.0
MEDCSAGGSLNSANYTSPLPWIGLYVAAASTACVIAMAMDLVHAFWNRKFWFPTKYFSINATSLTVITAAIKFSVDLNTPMPSRVDQLSKLSSGVLVCVA
IANSMPSLGTVKNKEVMMNVIAFTIMVLTVLVNVAIQLGTRVIYICWEEHAVVMSLMAAMLMILVGSGLAVPKMKTELEVKYRKRYELALREGTTTKDMR
KTPEELKDDLRKFWIMAHSSDPQFVLGRSATCTASGALCLLCDIVLAEAMLRSFLVMQVCSGESDYKWSTSLVLVSQTVGVVVGSVAPAIRWFHFCRRRK
SKSRYFKVEKYWIQYLVEIKECPFIHIKSEYLRRLAHRVKSRMLDACIGVQIAIVTGCKLIQFISIFFVGRTVKKLNNSDRNNSSIDLSQFVLHLEGEEE
LVEVTMRKSSNATDHWMQRGKTRQPKHLTDLLGNATLGFEGLRELEFENSVSVEGELPPPRCCCWSLPIVTLTAIAVALPNVSSRAVKDLLNGVHEGLVY
VNLVEDNQEDSRQDLATTTKARIAAHRVWSSVDIYNKWYNIDLRNLSVKSQSTRKVLQELAEAGKSMLADCRKKKNRNTLKWNAKRIAANSMYRVSSTIL
LRKCHTNNNNEADSGERMFGAVAAMISDVLAACLTNLRPVIFCKCLKSTIEERKVKVREAVYLLGETEEIVKLLDQSSISIVYPDKVTNIDSWLSLQTQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17250 unknown protein Lus10008508
[exp]
0 1
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10016317
[exp]
1.0 0.9059
AT4G32680 unknown protein Lus10035889
[exp]
2.2 0.8673
AT5G43280 ATDCI1 "delta\(3,5\),delta\(2,4\)-die... Lus10002583
[exp]
4.9 0.8680
AT5G07840 PIA1 phytochrome interacting ankyri... Lus10018958
[exp]
5.1 0.8830
Lus10020716
[exp]
6.6 0.7948
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Lus10018018
[exp]
7.4 0.8430
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10002738
[exp]
8.2 0.8251
AT5G42300 UBL5 ubiquitin-like protein 5 (.1) Lus10002228
[exp]
9.3 0.8750
AT4G37420 Domain of unknown function (DU... Lus10016022
[exp]
9.6 0.8059
AT1G25275 unknown protein Lus10006792
[exp]
10.0 0.8459

Lus10008508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.