Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02065 76 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006736 [exp] 74 / 7e-14 AT3G02065 686 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10020088 [exp] 74 / 8e-14 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110600 [exp] 440 / 1e-152 AT3G02065 74 / 6e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G140100 [exp] 74 / 6e-14 AT3G02065 681 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10008509 pacid=23177399 polypeptide=Lus10008509 locus=Lus10008509.g ID=Lus10008509.BGIv1.0 annot-version=v1.0 ATGACAACGAGGTCGAATTTCTACAAGAACTCATCAATATCATACAAACAGGATCTGAGCGTTTCTTCAGTACTTCAGAATCTCAAAGCGTATAACCTCG CAACCGGAAATGTTGCGGTGAGAGACGACGAACCGCCCAATGTCGAAGGAAAGGCAAAGAAGAGCCGGCGAAAGCGGATTCGGACGGAGGAGAAATCTCC TCAGCTGAGCGAGTTTCATCGTGAAGCTGAAGAGGATGATCGGCCGATGAATGAAGCGAGCTTGTCACGGCCTTATGAACCACTCAGTGCCGATGTTTTG GGGCGTACTCAATCAGTGTTGAACTTGGCAGCCTATGAAAGTGACGAAAGTAATTCTTCGGAATCGGACAAGGAGGATACTTCACTCACTGGCGTCACAG ATGGACCGGAGCAGATAAAGACGAGGGACGAACAGCGCTTTCCCATTGCTGGAGAACCGTTCTGTGTAGTATGCGGTAGATATGGGGAGTATATCTGCAA CGAGACGGATGATGATATATGCAGTCTGGAATGCAAGGCTGAGCTTCTGCAGAGAGTTCAATGTGCTAAGCTAGCAGAAAGCAACAGCAATCAAGATGTC TCTTCATCTAGATCCCGAGGTGCCACATTGATGCCCGAGTTAGGAGAGAGCACTTGGGACCATGAACGCAATTGCTGGTCCAAACAGAGATCGAATCTTT GTGCCTATGAATGTTGGAAATGTCAGAAACCTGGACACCTTGCAGAAGACTGTTTGGTTGCATCAAATGAACAGGATATATCTAGGAGTGCAAATGCCAT ATCCAAAGATCTCCGTGACCTTTACAGAAGATGCCATCAGATCGGCCGTAACTTGTCAGGAGCAAACTGCAGTTCATGCTGTAGCTCTTTAAGCTTAGCT ACTTGCTTGGATTGCAATGCTGTCTTCTGTGACAATGCAGGACATTTGGATGAGCATATCAGGATGTATCCATCTCATCAGCAGTATTACTCTCATAAAC TTAAACGACTAGTGAAATGCTGTAAATCAACATGCAAGGTGACGAAGATGAGGGATCTATTGACTTGCCACTACTGCTTCGACAAAGCATTCGACAAATA CTACGATATGTACACTGCAAGCTGGAAAGCATCTGGACTCTCGGTCATCTCAGGTTCTGTTTGCTGTGAAGATCACTTCGAATGGCATAGAATGAACTGT ACGAATGCAGATGTTGAAGACAAAGCATACATACTCTCTAGAACTGCACACAAGGGCAAGTCTGTTCAGCTTAGTGACTTCATCTTCTAA
AA sequence Show only first row Show all	>Lus10008509 pacid=23177399 polypeptide=Lus10008509 locus=Lus10008509.g ID=Lus10008509.BGIv1.0 annot-version=v1.0 MTTRSNFYKNSSISYKQDLSVSSVLQNLKAYNLATGNVAVRDDEPPNVEGKAKKSRRKRIRTEEKSPQLSEFHREAEEDDRPMNEASLSRPYEPLSADVL GRTQSVLNLAAYESDESNSSESDKEDTSLTGVTDGPEQIKTRDEQRFPIAGEPFCVVCGRYGEYICNETDDDICSLECKAELLQRVQCAKLAESNSNQDV SSSRSRGATLMPELGESTWDHERNCWSKQRSNLCAYECWKCQKPGHLAEDCLVASNEQDISRSANAISKDLRDLYRRCHQIGRNLSGANCSSCCSSLSLA TCLDCNAVFCDNAGHLDEHIRMYPSHQQYYSHKLKRLVKCCKSTCKVTKMRDLLTCHYCFDKAFDKYYDMYTASWKASGLSVISGSVCCEDHFEWHRMNC TNADVEDKAYILSRTAHKGKSVQLSDFIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02065			P-loop containing nucleoside t...		Lus10008509 [exp]	0	1
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	2.8	0.8358
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	5.1	0.7968
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036158 [exp]	8.7	0.8279
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	14.0	0.8425
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	27.2	0.8285
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	32.6	0.8029
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	37.9	0.8049
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	49.1	0.8115
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10021147 [exp]	50.7	0.7546
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005169 [exp]	52.5	0.7931

Compare expression of checked genes

Lus10008509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.