Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16570 484 / 6e-162 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) AT4G16530 139 / 8e-34 Family of unknown function (DUF577) (.1) AT2G03010 62 / 5e-10 Family of unknown function (DUF577) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004715 [exp] 649 / 0 AT4G16570 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Lus10000730 [exp] 313 / 2e-102 AT4G16530 165 / 1e-46 Family of unknown function (DUF577) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076500 [exp] 572 / 0 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Potri.001G123200 [exp] 187 / 8e-55 AT4G16530 118 / 3e-30 Family of unknown function (DUF577) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008510 pacid=23177415 polypeptide=Lus10008510 locus=Lus10008510.g ID=Lus10008510.BGIv1.0 annot-version=v1.0 ATGGGAGGCCACGGAGGTCTGAACATTCTCCCTCAGAAGCGATGGAACGTTTACAGAGAAGACAACCGAGCGAAAGTCCGGAAGGACGAGGAAGCCGCAG CAAAAGAGGAGCAGCTGAAGCGCGAACAATCGAGGAAGAGAGACACCGAGTTCCGCCTCGAACAGCTCCGGTCTGCCCGCGGATTGGCTCCGATCATCAA ACCTCCAGCTGCAGAAGAGTCGAAGGCGCCGGAGTTGGAGCAACAAGAGCAAGTTGCGAAGCCTTCTGCTGAATCGGAGGGCAAGGATGACGGAAGACAC ATCAACCTCTTCGAAGGGATCAAGATCTTCGATCCGATTTTCATGAAGTCAGGGGCGGAGGGAGAGAGGAAGAAGAAGAAGGAAGGAGACGACGGAGAGA AGGACCGGAAGAGGAAGAGACCGAAGAAGGAGGAGGAGGTTAGGGTCGTGACGGCTGAGGATGAGAAGTTCAGGTTAGGATATGGACTCGCCGGGAAAGG AGTTAAAACGCCGTGGTACTTGGAGAAGAAGTCGGATAAGGTTGAAAAAGGCGACGATGAAGGTTCCAGAAGAGGTCATGACGGATGGAAGAAGAGCGTG GAGAAGAAGAAGAAGACAGTGGAGGAGTTGAGAGAGGAGAGGTTGAAGAGGGAGAAGGTCGAGAAGGAGAGACAGAGAGCTGTGTTGGCAGAGCAGAGCC GCAGAGATGGCGGATTCTCCAGAAGCAGTGCTGGGACTGGATTGCTGTCGATGATGGCGGCTCGGGCAATGGGTGGTGGTGGAAAGGTGACGTCTTGTGA GTCGTATCTTCCAATGGCGAAACTAATGAGGAAAGTTCTTCATGTTAATGGTATGGGGAAGGATATTAAGGTTATCAACAAGTGGTCCGACGAGCTTGAA ATGGGGGTTGACATTCCTTCGCGTGCAGATGTTCTGGTCAGTGAGATTCTGGATTCTGAACTGTTGGGAGAAGGTTTGATTCCGTCTCTGCAACATGCTC ACGACGAATTGTTGGTCGAAAATCCACTGACCGTTCCCTATCGAGCGATGACTTATGGTCAGCTGGTGGAGAGTTCATTCTTCCGGAAGCTACACGATCT GCGCAACAATGAACGAAGATTCGGATGCAATTCGTCTCGGACTCACCAGCTGTCGAAGCCCTTTGAAATATTTGCATTTGATTTCTGGAGAAGGCCTGAG AGCCCTGGAGAAGCTAAGTTGCTTGTGGAGGCCACTGATGATGGTAGAGCTAATGGCATAGTGTCATGGTGGGTACTTCAGCTCGACCGTAAAGGGACGA TCTTTTACTCCACCGCACCTAACTGGATCGATCAGCCAGTAAACACAGGAGCTGGCTACTGGTGTGACCACTGGAAACAATGCGTGCGGTTCATTCCAGA CGAAGGGATACATGTCTCCAAGGGTGACGAGCTGGTTTTGCACGCTTTCCATAACGAGATCAGTGTTTCATATAGTATGGCGAGTGAAGGTAACGAGGTT AGCCATTATGATTCAGCTCCTGGTGATTTTCACCTCCTAATGCCTCCCGAAAGGATTGCGATCTATGGAGATATCAAATGGAGATCAGCCATGTCAAAGG CATTAGGGAAAAAGCTGGGTACTCGATATCTCGAAACCGTTGCTAAGGCGAATGGTATCGCTGCCAATCGTATTGAAGTTGTTAAAGACAAGAAAAACAT CCCACTGCATGTTGATCTGCTAATTGGCGAACCGTACTATCATGGTAACGAGGGGATGCTTCCTTGGCAGAATCTGCGGTTTTGGAAGGATCGGACCATA CTAGAACATTTCCTGTCCGAGGATGCGACCATTTTGTCTTGTAAAGCATTACTAAAAGCATGCACCCTGTCTCTTCCGGATCTCTGGAACAGCCGTCGTT CCCTAGCTAAGATTGAAGGTTTCGAACATTTCATTGCTAATTCTACTATAGGAGCATGTGGTGAACTACCAGCAGGACAAGAGGGACCTCTGCTACCATT CTTCATCTGGCAATGTGGCAAAACCAAGGCGAGCCCTTTTTACCATCTGGATTCGTCACTGATCGCTATTTTACAGATTGCATTCATGATTTGCGAATTT GAGAACGTTTGA
AA sequence Show only first row Show all	>Lus10008510 pacid=23177415 polypeptide=Lus10008510 locus=Lus10008510.g ID=Lus10008510.BGIv1.0 annot-version=v1.0 MGGHGGLNILPQKRWNVYREDNRAKVRKDEEAAAKEEQLKREQSRKRDTEFRLEQLRSARGLAPIIKPPAAEESKAPELEQQEQVAKPSAESEGKDDGRH INLFEGIKIFDPIFMKSGAEGERKKKKEGDDGEKDRKRKRPKKEEEVRVVTAEDEKFRLGYGLAGKGVKTPWYLEKKSDKVEKGDDEGSRRGHDGWKKSV EKKKKTVEELREERLKREKVEKERQRAVLAEQSRRDGGFSRSSAGTGLLSMMAARAMGGGGKVTSCESYLPMAKLMRKVLHVNGMGKDIKVINKWSDELE MGVDIPSRADVLVSEILDSELLGEGLIPSLQHAHDELLVENPLTVPYRAMTYGQLVESSFFRKLHDLRNNERRFGCNSSRTHQLSKPFEIFAFDFWRRPE SPGEAKLLVEATDDGRANGIVSWWVLQLDRKGTIFYSTAPNWIDQPVNTGAGYWCDHWKQCVRFIPDEGIHVSKGDELVLHAFHNEISVSYSMASEGNEV SHYDSAPGDFHLLMPPERIAIYGDIKWRSAMSKALGKKLGTRYLETVAKANGIAANRIEVVKDKKNIPLHVDLLIGEPYYHGNEGMLPWQNLRFWKDRTI LEHFLSEDATILSCKALLKACTLSLPDLWNSRRSLAKIEGFEHFIANSTIGACGELPAGQEGPLLPFFIWQCGKTKASPFYHLDSSLIAILQIAFMICEF ENV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	1.4	0.8412
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	4.2	0.7815
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10027182 [exp]	5.7	0.7457
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	7.9	0.7882
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	11.7	0.7962
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	12.2	0.7204
AT1G76200			unknown protein		Lus10034571 [exp]	12.6	0.7851
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	15.2	0.7733
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	17.6	0.7563
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	18.0	0.7413

Compare expression of checked genes

Lus10008510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.