Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G18770 49 / 5e-06 F-box/FBD-like domains containing protein (.1) AT3G59000 48 / 8e-06 F-box/RNI-like superfamily protein (.1.2) AT5G22730 48 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 44 / 2e-05 F-box family protein (.1) AT5G27750 46 / 4e-05 F-box/FBD-like domains containing protein (.1) AT5G22700 45 / 6e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G03040 44 / 0.0001 F-box/RNI-like superfamily protein (.1) AT5G44940 44 / 0.0002 F-box/RNI-like superfamily protein (.1) AT1G67390 44 / 0.0002 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000726 [exp] 649 / 0 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10000727 [exp] 316 / 3e-104 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10000728 [exp] 286 / 4e-93 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10000729 [exp] 288 / 9e-93 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10008524 [exp] 241 / 2e-75 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008517 [exp] 177 / 3e-51 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004718 [exp] 122 / 1e-31 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 69 / 1e-12 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10020292 [exp] 67 / 1e-11 AT1G60410 76 / 9e-15 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 82 / 4e-17 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 63 / 8e-11 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 63 / 1e-10 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G098700 [exp] 44 / 0.0002 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024300 [exp] 44 / 0.0002 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.008G050800 [exp] 44 / 0.0002 AT2G39490 264 / 1e-84 F-box family protein (.1) Potri.011G104200 [exp] 44 / 0.0002 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 42 / 0.0006 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008511 pacid=23177359 polypeptide=Lus10008511 locus=Lus10008511.g ID=Lus10008511.BGIv1.0 annot-version=v1.0 ATGAACGGAGAAACGGGGACGCCGGCCAGCCAAACTACCGACAGGATCAGTAGCCTCCCCGACGAGATCCTCCGTCGCATACTGATCGCCGCCGACCTCG ACCTAAGGTCCTCCACCGAAACAGCCCTCATCTCCAGCCGCTGGCGTTCCCTCTGGAAATCCACCATCACAAAGCTCCATTTCCATGTACCAACCTTCCC CGACCACCAACAGCGGGAGAACTTCATCGGATTCGTCGAGAAACTCTTGTCGATTCGCGGGGAGTATCCCGACACCGATCTAGACGTTCTCTCCCTGAGC ACCGACGAAATGCTGGTCGCGGACTTGTTTGATCTCTTGGCGAAGATTTTCGCCCATGGGGTGGCAAACCGGGCCCGGACTTTCCGACTTGCTGTAAATT TGAACCCGACTCGGTTTCTCCCGCCCAATGAACAGGATTCCTATCAGGTTCCCCCGCCCGGTCTGATCGCCCTGTGCGATTCAGTTGAGAACCTCGAGCT CTCACTCTATTCCAATCTTGACATTCTGAGGGCCTCGACCAACTTCCCAACCCTCAAGACGCTCCGCCTTGTGGACTGTGTGATGAGGTCCTCGGGGCCT CATCCTACGCCTCCTAGGACTCGTGATCAGAGTGTATACGACTTCCTGAACCAAGGGTTCCCGGATCTAACCAAGTTGGAGTTGGTCGAATGTGATTTCC AGACCACTCGCCCGGTCCACATTTTGGGTGGCGATAAATTGGTTGAGCTTGTGATGCTGTGGCCTAGGCCACCCCGATACAACCCATATCGTCATAACAT GTTCGTTTGTGCACCCCGGGTCAAGTCCTTTACGTGCAAGGAAATGAAGGCCAATTGGCTTAAGAGCTTCGAACTCCCTTCGTTGGAGTGTTTGGATATC GACGCCTACCTCCCCTTGAAGATAGGGAACGACCGAAGAAACTCGTGTCAAAAGGTCTTTCGTCACCTTCGAAAGTTTGCTGGTTTGAAGCGCGTGAAGT TGCATCCTAGAACAATCAAGGCGCTCATAATGGTTCCCGGTCTGCTAGAAATGGAAGACTCTCCATTCAAGAATATGGAATGTGTTGAATTCCACAACAG TGGCAGTCTCCTATCGAACCAGAGAGTTTTCAACGCTCTGGTCAGTTACCTCTTCGACCATTGCATTCGAGGAAGAACTGCTCTCTTCGACAGGATCCTC GCTCAAACAGGTGCAGGCGACGACAGCAGCAGCTCGAGGCCGGTAGTCATCTACAAGAGTGACTTAGCTTGA
AA sequence Show only first row Show all	>Lus10008511 pacid=23177359 polypeptide=Lus10008511 locus=Lus10008511.g ID=Lus10008511.BGIv1.0 annot-version=v1.0 MNGETGTPASQTTDRISSLPDEILRRILIAADLDLRSSTETALISSRWRSLWKSTITKLHFHVPTFPDHQQRENFIGFVEKLLSIRGEYPDTDLDVLSLS TDEMLVADLFDLLAKIFAHGVANRARTFRLAVNLNPTRFLPPNEQDSYQVPPPGLIALCDSVENLELSLYSNLDILRASTNFPTLKTLRLVDCVMRSSGP HPTPPRTRDQSVYDFLNQGFPDLTKLELVECDFQTTRPVHILGGDKLVELVMLWPRPPRYNPYRHNMFVCAPRVKSFTCKEMKANWLKSFELPSLECLDI DAYLPLKIGNDRRNSCQKVFRHLRKFAGLKRVKLHPRTIKALIMVPGLLEMEDSPFKNMECVEFHNSGSLLSNQRVFNALVSYLFDHCIRGRTALFDRIL AQTGAGDDSSSSRPVVIYKSDLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	3.6	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	3.7	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	4.9	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	6.3	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	6.5	1.0000
					Lus10022894 [exp]	6.7	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	6.9	1.0000
					Lus10022529 [exp]	7.2	1.0000
					Lus10002413 [exp]	7.4	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	7.7	1.0000

Compare expression of checked genes

Lus10008511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.