Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45140 224 / 2e-73 PVA12 plant VAP homolog 12 (.1) AT3G60600 220 / 6e-72 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 180 / 3e-56 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G23830 155 / 9e-48 PapD-like superfamily protein (.1) AT5G47180 141 / 2e-41 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G51270 145 / 4e-40 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT1G08820 132 / 2e-36 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT4G21450 47 / 4e-06 PapD-like superfamily protein (.1.2.3) AT4G05060 45 / 2e-05 PapD-like superfamily protein (.1) AT5G54110 42 / 0.0002 ATMAMI membrane-associated mannitol-induced (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007463 [exp] 306 / 2e-105 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 309 / 3e-103 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10010360 [exp] 216 / 2e-70 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 210 / 6e-68 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10015885 [exp] 207 / 5e-67 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10009279 [exp] 212 / 2e-62 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000032 [exp] 164 / 1e-51 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1) Lus10000031 [exp] 135 / 1e-40 AT3G60600 143 / 3e-44 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10033837 [exp] 136 / 8e-37 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152000 [exp] 261 / 4e-88 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.003G076100 [exp] 258 / 6e-87 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 236 / 3e-78 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 226 / 3e-74 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.002G144800 [exp] 201 / 1e-64 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.005G044900 [exp] 135 / 2e-37 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.013G031400 [exp] 135 / 2e-37 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 123 / 3e-34 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 120 / 5e-33 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 120 / 2e-32 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10008512 pacid=23177364 polypeptide=Lus10008512 locus=Lus10008512.g ID=Lus10008512.BGIv1.0 annot-version=v1.0 ATGACCTCCGCGGAGCTCCTCAGCATCGAACCTCTCGAGCTCAAATTTGCATTTGAATTGAAGAAGCAGATCTCATCGTCTCTCCAGTTGTCGAACAAAA CCGATAGTTATGTGGCCTTCAAGGTCAAGACAACGAATCCGAAGAAGTACTGTGTTCGGCCGAATGCAGGAGTCGTTCTGCCTCGTTCTACATGTGACAT CATAGTAACAATGCAAGCGCAGAAGGAAGCTCCTCCGGATATGCAATGCAAGGACAAATTCTTGCTTCAGAGCGTAAAAGCTCCAGAGGGTTCGACTGTA AAGGATATCACTGCTGAGATGTTCAATAAGGAGGCTGGACATATAGTTGAGGAAACCAAGTTGAAGGTTGTTTATGTTGCCCCACCTCAACCTCCTTCTC CTGTTCCCGAAGGTTCAGAGGAAGGATCATCTCCTCGCGGTTCTGTCTCGGACAATGGACATGTAAACGGTGCTGAGTTTGCTGCTGCTTCGAAAGCATT TGTCCAGCGGTTTGATACAGACGATAAATCTCCTGAGGCAAAAGCTCTTATCGCGAAGCTGACAGAGGAGAAGAACAGTGCCATTCAGCTAAACAACAAG CTTCGTCAGGAATTAGTGTTACATTTGGCTGGGCCACCGGCCTGTAAAATCTTAACTGGGCAGAACAAAAAAGCCCAACCGCCGCCGCCGCCCCAAATCT TTAAGCCCCGTAAGCCCCCCCCGCCGCCGCCGCCCAACAGTTACCAGTCTGAGTAG
AA sequence Show only first row Show all	>Lus10008512 pacid=23177364 polypeptide=Lus10008512 locus=Lus10008512.g ID=Lus10008512.BGIv1.0 annot-version=v1.0 MTSAELLSIEPLELKFAFELKKQISSSLQLSNKTDSYVAFKVKTTNPKKYCVRPNAGVVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKAPEGSTV KDITAEMFNKEAGHIVEETKLKVVYVAPPQPPSPVPEGSEEGSSPRGSVSDNGHVNGAEFAAASKAFVQRFDTDDKSPEAKALIAKLTEEKNSAIQLNNK LRQELVLHLAGPPACKILTGQNKKAQPPPPPQIFKPRKPPPPPPPNSYQSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	0	1
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	5.5	0.7857
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	10.2	0.7596
AT2G36220			unknown protein		Lus10022709 [exp]	11.7	0.7705
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	12.0	0.7561
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	12.8	0.7715
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	13.7	0.7674
AT4G14380			unknown protein		Lus10021182 [exp]	16.1	0.7821
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10005653 [exp]	17.3	0.7210
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	21.2	0.7550
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	25.9	0.7293

Compare expression of checked genes

Lus10008512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.